{"id":"https://openalex.org/W3007568362","doi":"https://doi.org/10.1145/3366030.3366104","title":"Named Entity Recognition for Biomedical Patent Text using Bi-LSTM Variants","display_name":"Named Entity Recognition for Biomedical Patent Text using Bi-LSTM Variants","publication_year":2019,"publication_date":"2019-12-02","ids":{"openalex":"https://openalex.org/W3007568362","doi":"https://doi.org/10.1145/3366030.3366104","mag":"3007568362"},"language":"en","primary_location":{"id":"doi:10.1145/3366030.3366104","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3366030.3366104","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 21st International Conference on Information Integration and Web-based Applications &amp; Services","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043107859","display_name":"Farag Saad","orcid":null},"institutions":[{"id":"https://openalex.org/I158675288","display_name":"FIZ Karlsruhe \u2013 Leibniz Institute for Information Infrastructure","ror":"https://ror.org/0387prb75","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I158675288","https://openalex.org/I315704651"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Farag Saad","raw_affiliation_strings":["FIZ karlsruhe - Leibniz Institute For Information Infrastructure, Eggenstein-Leopoldshafen, Baden W\u00fcrttemberg"],"affiliations":[{"raw_affiliation_string":"FIZ karlsruhe - Leibniz Institute For Information Infrastructure, Eggenstein-Leopoldshafen, Baden W\u00fcrttemberg","institution_ids":["https://openalex.org/I158675288"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5043107859"],"corresponding_institution_ids":["https://openalex.org/I158675288"],"apc_list":null,"apc_paid":null,"fwci":0.1718,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.54480008,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"617","last_page":"621"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7774263024330139},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.7091979384422302},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6563595533370972},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.650290310382843},{"id":"https://openalex.org/keywords/pace","display_name":"Pace","score":0.6439133286476135},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5685760378837585},{"id":"https://openalex.org/keywords/security-token","display_name":"Security token","score":0.5593708753585815},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5470553040504456},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5445265769958496},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5052385926246643},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.4692288339138031},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4646534323692322},{"id":"https://openalex.org/keywords/sequence-labeling","display_name":"Sequence labeling","score":0.41789957880973816},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37890562415122986},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3594970107078552},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07475391030311584}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7774263024330139},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.7091979384422302},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6563595533370972},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.650290310382843},{"id":"https://openalex.org/C2777526511","wikidata":"https://www.wikidata.org/wiki/Q691543","display_name":"Pace","level":2,"score":0.6439133286476135},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5685760378837585},{"id":"https://openalex.org/C48145219","wikidata":"https://www.wikidata.org/wiki/Q1335365","display_name":"Security token","level":2,"score":0.5593708753585815},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5470553040504456},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5445265769958496},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5052385926246643},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.4692288339138031},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4646534323692322},{"id":"https://openalex.org/C35639132","wikidata":"https://www.wikidata.org/wiki/Q7452468","display_name":"Sequence labeling","level":3,"score":0.41789957880973816},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37890562415122986},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3594970107078552},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07475391030311584},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3366030.3366104","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3366030.3366104","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 21st International Conference on Information Integration and Web-based Applications &amp; Services","raw_type":"proceedings-article"},{"id":"mag:3160936607","is_oa":false,"landing_page_url":"https://jglobal.jst.go.jp/en/detail?JGLOBAL_ID=202002221615292993","pdf_url":null,"source":{"id":"https://openalex.org/S4306500161","display_name":"ACM Proceedings","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"ACM Proceedings","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.8500000238418579}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1989376674","https://openalex.org/W1996699506","https://openalex.org/W2064675550","https://openalex.org/W2076018790","https://openalex.org/W2117130368","https://openalex.org/W2123556395","https://openalex.org/W2141869602","https://openalex.org/W2144001613","https://openalex.org/W2154142897","https://openalex.org/W2158899491","https://openalex.org/W2550305434","https://openalex.org/W2767691613","https://openalex.org/W2800535933","https://openalex.org/W2804221886","https://openalex.org/W2911361106"],"related_works":["https://openalex.org/W4401821554","https://openalex.org/W4399418584","https://openalex.org/W2334378031","https://openalex.org/W189110383","https://openalex.org/W2945210837","https://openalex.org/W2916255597","https://openalex.org/W2530283981","https://openalex.org/W2589080577","https://openalex.org/W3161409692","https://openalex.org/W4321523623"],"abstract_inverted_index":{"Recent":[0],"years":[1],"have":[2],"shown":[3],"a":[4,18,44,82],"substantial":[5],"increase":[6],"in":[7,28,53],"biomedical":[8],"publications":[9],"(patents":[10],"or":[11],"scientific":[12],"articles)":[13],"that":[14],"are":[15],"multiplying":[16],"at":[17],"daily":[19],"pace.":[20],"This":[21],"has":[22],"led":[23],"to":[24,65,118],"an":[25,106,124],"increased":[26],"interest":[27],"the":[29,66,72,93,120,130,140,146],"extraction":[30],"of":[31,47,71,92,123],"meaningful":[32],"information":[33],"(e.g.,":[34],"named":[35],"entities)":[36],"from":[37,105],"these":[38],"publications.":[39],"Traditional":[40],"NER":[41,98],"approaches":[42],"demand":[43],"considerable":[45],"level":[46],"engineering":[48],"skills":[49],"and":[50,56,68,78,109,127,143],"domain":[51],"expertise":[52],"designing":[54],"rules":[55,77],"features":[57,79,102],"for":[58,97,133],"better":[59],"algorithm":[60],"accuracy.":[61],"In":[62,85],"addition,":[63],"due":[64],"structure":[67],"linguistic":[69],"complexity":[70],"patent":[73,111],"text,":[74],"constructing":[75],"such":[76],"is":[80,116],"often":[81],"challenging":[83],"task.":[84],"this":[86],"paper,":[87],"we":[88],"investigate":[89],"various":[90],"variants":[91],"Bi-LSTM":[94],"model":[95,115],"performance":[96,142],"task":[99],"based":[100],"on":[101],"generated":[103],"automatically":[104],"unlabelled":[107],"genes":[108],"proteins":[110],"corpora.":[112],"The":[113,136],"proposed":[114],"able":[117],"capture":[119],"context":[121],"representation":[122],"input":[125],"sequence":[126],"globally":[128],"assign":[129],"related":[131],"labels":[132],"each":[134],"token.":[135],"CHARS-Bi-LSTM-EMA":[137],"variant":[138],"yielded":[139],"best":[141],"significantly":[144],"outperformed":[145],"state-of-the":[147],"art":[148],"approach.":[149]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
