{"id":"https://openalex.org/W2984216370","doi":"https://doi.org/10.1145/3359996.3365042","title":"Virtual environment for processing medial axis representations of 3D nanoscale reconstructions of brain cellular structures","display_name":"Virtual environment for processing medial axis representations of 3D nanoscale reconstructions of brain cellular structures","publication_year":2019,"publication_date":"2019-11-12","ids":{"openalex":"https://openalex.org/W2984216370","doi":"https://doi.org/10.1145/3359996.3365042","mag":"2984216370"},"language":"en","primary_location":{"id":"doi:10.1145/3359996.3365042","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3359996.3365042","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"25th ACM Symposium on Virtual Reality Software and Technology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071359855","display_name":"Daniya Boges","orcid":"https://orcid.org/0009-0008-2629-7451"},"institutions":[{"id":"https://openalex.org/I4210099236","display_name":"Kootenay Association for Science & Technology","ror":"https://ror.org/011pv9p44","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210099236"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["CA","SA"],"is_corresponding":true,"raw_author_name":"Daniya Boges","raw_affiliation_strings":["KAUST"],"affiliations":[{"raw_affiliation_string":"KAUST","institution_ids":["https://openalex.org/I4210099236","https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025332800","display_name":"Corrado Cal\u0131","orcid":"https://orcid.org/0000-0003-4856-0835"},"institutions":[{"id":"https://openalex.org/I4210099236","display_name":"Kootenay Association for Science & Technology","ror":"https://ror.org/011pv9p44","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210099236"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["CA","SA"],"is_corresponding":false,"raw_author_name":"Corrado Cali'","raw_affiliation_strings":["KAUST"],"affiliations":[{"raw_affiliation_string":"KAUST","institution_ids":["https://openalex.org/I4210099236","https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037451153","display_name":"Pierre J. Magistretti","orcid":"https://orcid.org/0000-0002-6678-320X"},"institutions":[{"id":"https://openalex.org/I4210099236","display_name":"Kootenay Association for Science & Technology","ror":"https://ror.org/011pv9p44","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210099236"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["CA","SA"],"is_corresponding":false,"raw_author_name":"Pierre J. Magistretti","raw_affiliation_strings":["KAUST"],"affiliations":[{"raw_affiliation_string":"KAUST","institution_ids":["https://openalex.org/I4210099236","https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008754293","display_name":"Markus Hadwiger","orcid":"https://orcid.org/0000-0003-1239-4871"},"institutions":[{"id":"https://openalex.org/I4210099236","display_name":"Kootenay Association for Science & Technology","ror":"https://ror.org/011pv9p44","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210099236"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["CA","SA"],"is_corresponding":false,"raw_author_name":"Markus Hadwiger","raw_affiliation_strings":["KAUST"],"affiliations":[{"raw_affiliation_string":"KAUST","institution_ids":["https://openalex.org/I4210099236","https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007690930","display_name":"Ronell Sicat","orcid":"https://orcid.org/0000-0001-7037-1614"},"institutions":[{"id":"https://openalex.org/I4210099236","display_name":"Kootenay Association for Science & Technology","ror":"https://ror.org/011pv9p44","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210099236"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["CA","SA"],"is_corresponding":false,"raw_author_name":"Ronell Sicat","raw_affiliation_strings":["KAUST"],"affiliations":[{"raw_affiliation_string":"KAUST","institution_ids":["https://openalex.org/I4210099236","https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013856888","display_name":"Marco Agus","orcid":"https://orcid.org/0000-0003-2752-3525"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Marco Agus","raw_affiliation_strings":["KAUST, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"KAUST, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5071359855"],"corresponding_institution_ids":["https://openalex.org/I4210099236","https://openalex.org/I71920554"],"apc_list":null,"apc_paid":null,"fwci":0.5054,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.79454023,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6835631132125854},{"id":"https://openalex.org/keywords/virtual-reality","display_name":"Virtual reality","score":0.6063944101333618},{"id":"https://openalex.org/keywords/medial-axis","display_name":"Medial axis","score":0.5844606161117554},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4368411600589752},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.43055087327957153},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.4035402238368988}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6835631132125854},{"id":"https://openalex.org/C194969405","wikidata":"https://www.wikidata.org/wiki/Q170519","display_name":"Virtual reality","level":2,"score":0.6063944101333618},{"id":"https://openalex.org/C185877587","wikidata":"https://www.wikidata.org/wiki/Q1757407","display_name":"Medial axis","level":2,"score":0.5844606161117554},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4368411600589752},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.43055087327957153},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.4035402238368988}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3359996.3365042","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3359996.3365042","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"25th ACM Symposium on Virtual Reality Software and Technology","raw_type":"proceedings-article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/661107","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/661107","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7360419743","display_name":null,"funder_award_id":"CRG 2313","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1963962785","https://openalex.org/W2143560481","https://openalex.org/W2753527800","https://openalex.org/W2761733590","https://openalex.org/W2803440187","https://openalex.org/W2888068719","https://openalex.org/W2911934184","https://openalex.org/W2973537857","https://openalex.org/W4246416233"],"related_works":["https://openalex.org/W2058170566","https://openalex.org/W2772917594","https://openalex.org/W2755342338","https://openalex.org/W2166024367","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2951359407","https://openalex.org/W2079911747","https://openalex.org/W1969923398","https://openalex.org/W2775347418"],"abstract_inverted_index":{"We":[0],"present":[1],"a":[2,94,102,132,139],"novel":[3],"immersive":[4],"environment":[5],"for":[6,118],"the":[7,135],"interactive":[8],"analysis":[9],"of":[10,14,31,36,49,54,65,125,134,138],"nanoscale":[11],"cellular":[12,83],"reconstructions":[13,124],"rodent":[15],"brain":[16,37],"samples":[17],"acquired":[18],"through":[19],"electron":[20],"microscopy.":[21],"The":[22,90,111],"system":[23,112],"is":[24,41,113],"focused":[25],"on":[26,86,122],"medial":[27,87],"axis":[28,88],"representations":[29,53],"(skeletons)":[30],"branched":[32],"and":[33,39,56,63,70,77,108,128],"tubular":[34],"structures":[35,57,84],"cells,":[38],"it":[40],"specifically":[42],"designed":[43],"for:":[44],"i)":[45],"effective":[46],"semi-automatic":[47],"creation":[48],"skeletons":[50],"from":[51,131],"surface-based":[52],"cells":[55,127],"ii)":[58],"fast":[59],"proofreading,":[60],"i.e.,":[61,74],"correcting":[62],"editing":[64],"semi-automatically":[66],"constructed":[67],"skeleton":[68],"representations,":[69],"iii)":[71],"useful":[72],"exploration,":[73],"measuring,":[75],"comparing,":[76],"analyzing":[78],"geometric":[79],"features":[80],"related":[81],"to":[82],"based":[85],"representations.":[89],"application":[91],"runs":[92],"in":[93],"standard":[95],"PC-tethered":[96],"virtual":[97],"reality":[98],"(VR)":[99],"setup":[100],"with":[101],"head":[103],"mounted":[104],"display":[105],"(HMD),":[106],"controllers,":[107],"tracking":[109],"sensors.":[110],"currently":[114],"used":[115],"by":[116],"neuroscientists":[117],"performing":[119],"morphology":[120],"studies":[121],"sparse":[123],"glial":[126],"neurons":[129],"extracted":[130],"sample":[133],"somatosensory":[136],"cortex":[137],"juvenile":[140],"rat.":[141]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
