{"id":"https://openalex.org/W2980022714","doi":"https://doi.org/10.1145/3358211","title":"SWARAM","display_name":"SWARAM","publication_year":2019,"publication_date":"2019-10-08","ids":{"openalex":"https://openalex.org/W2980022714","doi":"https://doi.org/10.1145/3358211","mag":"2980022714"},"language":"en","primary_location":{"id":"doi:10.1145/3358211","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3358211","pdf_url":null,"source":{"id":"https://openalex.org/S136160450","display_name":"ACM Transactions on Embedded Computing Systems","issn_l":"1539-9087","issn":["1539-9087","1558-3465"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Embedded Computing Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057808088","display_name":"Ram Prasad Mohanty","orcid":"https://orcid.org/0000-0002-5113-5429"},"institutions":[{"id":"https://openalex.org/I188329596","display_name":"University of Canberra","ror":"https://ror.org/04s1nv328","country_code":"AU","type":"education","lineage":["https://openalex.org/I188329596"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ram Prasad Mohanty","raw_affiliation_strings":["University of New South Wales, Canberra, ACT, Australia"],"raw_orcid":"https://orcid.org/0000-0002-5113-5429","affiliations":[{"raw_affiliation_string":"University of New South Wales, Canberra, ACT, Australia","institution_ids":["https://openalex.org/I188329596","https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050266267","display_name":"Hasindu Gamaarachchi","orcid":"https://orcid.org/0000-0002-9034-9905"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Hasindu Gamaarachchi","raw_affiliation_strings":["University of New South Wales, Sydney, NSW, Australia"],"raw_orcid":"https://orcid.org/0000-0002-9034-9905","affiliations":[{"raw_affiliation_string":"University of New South Wales, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072459625","display_name":"Andrew Lambert","orcid":"https://orcid.org/0000-0003-0390-4446"},"institutions":[{"id":"https://openalex.org/I188329596","display_name":"University of Canberra","ror":"https://ror.org/04s1nv328","country_code":"AU","type":"education","lineage":["https://openalex.org/I188329596"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Andrew Lambert","raw_affiliation_strings":["University of New South Wales, Canberra, ACT, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of New South Wales, Canberra, ACT, Australia","institution_ids":["https://openalex.org/I188329596","https://openalex.org/I31746571"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030042327","display_name":"Sri Parameswaran","orcid":"https://orcid.org/0000-0003-0435-9080"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sri Parameswaran","raw_affiliation_strings":["University of New South Wales, Sydney, NSW, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of New South Wales, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I31746571"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.3314,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.58834831,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"18","issue":"5s","first_page":"1","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9753999710083008,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8785043358802795},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6800958514213562},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6346507668495178},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6094667315483093},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.5818779468536377},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4591469466686249},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4398552179336548},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.42024824023246765},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.4172179102897644},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.34970253705978394},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.31397518515586853},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.26807457208633423},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2239525020122528}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8785043358802795},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6800958514213562},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6346507668495178},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6094667315483093},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.5818779468536377},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4591469466686249},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4398552179336548},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.42024824023246765},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.4172179102897644},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.34970253705978394},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.31397518515586853},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.26807457208633423},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2239525020122528},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3358211","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3358211","pdf_url":null,"source":{"id":"https://openalex.org/S136160450","display_name":"ACM Transactions on Embedded Computing Systems","issn_l":"1539-9087","issn":["1539-9087","1558-3465"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Embedded Computing Systems","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.7799999713897705}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1975375203","https://openalex.org/W1977046764","https://openalex.org/W1980132682","https://openalex.org/W1994458586","https://openalex.org/W1997512351","https://openalex.org/W2037748100","https://openalex.org/W2054943596","https://openalex.org/W2060965924","https://openalex.org/W2090705041","https://openalex.org/W2093931624","https://openalex.org/W2104846587","https://openalex.org/W2108234281","https://openalex.org/W2110905563","https://openalex.org/W2117683095","https://openalex.org/W2121762798","https://openalex.org/W2131187246","https://openalex.org/W2143553089","https://openalex.org/W2144316495","https://openalex.org/W2149992227","https://openalex.org/W2155225458","https://openalex.org/W2166621589","https://openalex.org/W2168133698","https://openalex.org/W2168440186","https://openalex.org/W2173033037","https://openalex.org/W2189510244","https://openalex.org/W2274910253","https://openalex.org/W2330100020","https://openalex.org/W2466053952","https://openalex.org/W2488897859","https://openalex.org/W2590415818","https://openalex.org/W2615471603","https://openalex.org/W2883483151","https://openalex.org/W2936213937","https://openalex.org/W2952941592","https://openalex.org/W4244554235"],"related_works":["https://openalex.org/W17155033","https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W1590307681","https://openalex.org/W2536018345","https://openalex.org/W4312814274","https://openalex.org/W4285370786","https://openalex.org/W2296488620","https://openalex.org/W2358353312","https://openalex.org/W2353836703"],"abstract_inverted_index":{"Treatment":[0],"of":[1,11,15,21,41,45,229,249,252],"patients":[2],"using":[3],"high-quality":[4],"precision":[5],"medicine":[6],"requires":[7],"a":[8,16,39,78,83,104,140,156,201,230,242],"thorough":[9],"understanding":[10],"the":[12,19,32,46,58,110,118,151,211,215,250,253,265,274],"genetic":[13],"composition":[14],"patient.":[17],"Ideally,":[18],"identification":[20],"unique":[22,70],"variations":[23,71],"in":[24,72,96,121,139,147,194,273],"an":[25,73],"individual\u2019s":[26,74],"genome":[27,60,75,113],"is":[28,38,66,85],"needed":[29],"for":[30,57,68,112,150,167,214,263],"specifying":[31],"necessary":[33],"treatment.":[34],"Variant":[35],"calling":[36,56,169,221,267],"workflow":[37,84,170,222,268],"pipeline":[40,65],"tools,":[42],"integrating":[43],"state":[44],"art":[47],"software":[48],"systems":[49,100],"aimed":[50],"at":[51],"alignment,":[52],"sorting":[53],"and":[54,107,161,177,218,244,259],"variant":[55,168,220,266],"whole":[59],"sequencing":[61],"(WGS)":[62],"data.":[63],"This":[64],"utilized":[67],"identifying":[69],"(compared":[76],"to":[77,134,179,185,227],"reference":[79,183],"genome).":[80],"Currently,":[81],"such":[82,145],"implemented":[86],"on":[87,109,200,223,269],"high-performance":[88],"computers":[89],"(with":[90],"additional":[91],"GPUs":[92],"or":[93,95],"FPGAs)":[94],"cloud":[97],"computers.":[98],"Such":[99],"are":[101,191,271],"large,":[102],"have":[103],"high":[105],"cost,":[106],"rely":[108],"internet":[111,126],"data":[114,216],"transfer":[115,217],"which":[116,190],"makes":[117],"system":[119,164,173],"unusable":[120],"remote":[122],"locations":[123],"unequipped":[124],"with":[125,235],"connectivity.":[127],"It":[128],"further":[129],"raises":[130],"privacy":[131],"concerns":[132],"due":[133],"processing":[135,196],"being":[136],"carried":[137],"out":[138],"different":[141],"facility.":[142],"To":[143],"overcome":[144],"limitations,":[146],"this":[148],"paper,":[149],"first":[152],"time,":[153],"we":[154,261],"present":[155],"cost-efficient,":[157],"offline,":[158],"scalable,":[159],"portable,":[160],"energy-efficient":[162],"computing":[163],"named":[165],"SWARAM":[166,224,270],"processing.":[171],"The":[172,256],"uses":[174],"novel":[175],"architecture":[176],"algorithms":[178],"match":[180],"against":[181],"partial":[182],"genomes":[184],"exploit":[186],"smaller":[187],"memory":[188],"sizes":[189],"typically":[192],"available":[193,272],"tiny":[195],"systems.":[197],"Extensive":[198],"tests":[199],"standard":[202],"benchmark":[203],"data-set":[204],"(NA12878":[205],"Illumina":[206],"platinum":[207],"genome)":[208],"confirm":[209],"that":[210,228],"time":[212],"consumed":[213],"completing":[219],"was":[225],"competitive":[226],"32-core":[231],"Intel":[232],"Xeon":[233],"server":[234,254],"similar":[236],"accuracy,":[237],"but":[238],"costs":[239],"less":[240,246],"than":[241,247],"fifth,":[243],"consumes":[245],"40%":[248],"energy":[251],"system.":[255],"original":[257],"scripts":[258],"code":[260],"developed":[262],"executing":[264],"associated":[275],"Github":[276],"repository":[277],"https://github.com/Rammohanty/swaram.":[278]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2019-10-18T00:00:00"}
