{"id":"https://openalex.org/W3093988619","doi":"https://doi.org/10.1145/3340531.3412776","title":"BioKG","display_name":"BioKG","publication_year":2020,"publication_date":"2020-10-19","ids":{"openalex":"https://openalex.org/W3093988619","doi":"https://doi.org/10.1145/3340531.3412776","mag":"3093988619"},"language":"en","primary_location":{"id":"doi:10.1145/3340531.3412776","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3340531.3412776","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 29th ACM International Conference on Information &amp; Knowledge Management","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102791364","display_name":"Brian Walsh","orcid":"https://orcid.org/0000-0002-8640-2187"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Brian Walsh","raw_affiliation_strings":["NUI Galway Insight Centre for Data analytics, Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NUI Galway Insight Centre for Data analytics, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051014805","display_name":"Sameh K. Mohamed","orcid":"https://orcid.org/0000-0003-2659-2406"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Sameh K. Mohamed","raw_affiliation_strings":["NUI Galway Insight Centre for Data analytics, Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NUI Galway Insight Centre for Data analytics, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102905135","display_name":"V\u00edt Nov\u00e1\u010dek","orcid":"https://orcid.org/0000-0003-4687-6043"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"V\u00edt Nov\u00e1\u010dek","raw_affiliation_strings":["NUI Galway Insight Centre for Data analytics, Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NUI Galway Insight Centre for Data analytics, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.0008,"has_fulltext":false,"cited_by_count":69,"citation_normalized_percentile":{"value":0.87317906,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"3173","last_page":"3180"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8107208013534546},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.7347846627235413},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6257791519165039},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5785109400749207},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.5620647668838501},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5207131505012512},{"id":"https://openalex.org/keywords/statistical-relational-learning","display_name":"Statistical relational learning","score":0.49289917945861816},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4767628312110901},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.42108309268951416},{"id":"https://openalex.org/keywords/relational-model","display_name":"Relational model","score":0.4139992594718933},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.41333815455436707},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3929775059223175},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2944241464138031},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27938228845596313},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.20584148168563843},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.17869454622268677},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.13292214274406433}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8107208013534546},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.7347846627235413},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6257791519165039},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5785109400749207},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.5620647668838501},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5207131505012512},{"id":"https://openalex.org/C177877439","wikidata":"https://www.wikidata.org/wiki/Q7604413","display_name":"Statistical relational learning","level":3,"score":0.49289917945861816},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4767628312110901},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.42108309268951416},{"id":"https://openalex.org/C40207289","wikidata":"https://www.wikidata.org/wiki/Q755662","display_name":"Relational model","level":3,"score":0.4139992594718933},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.41333815455436707},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3929775059223175},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2944241464138031},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27938228845596313},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.20584148168563843},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.17869454622268677},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.13292214274406433},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3340531.3412776","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3340531.3412776","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 29th ACM International Conference on Information &amp; Knowledge Management","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3695527833","display_name":null,"funder_award_id":"12/RC/2289_P2","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"}],"funders":[{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W804133461","https://openalex.org/W1529533208","https://openalex.org/W2007069550","https://openalex.org/W2009313526","https://openalex.org/W2026926544","https://openalex.org/W2028133290","https://openalex.org/W2043764521","https://openalex.org/W2057545775","https://openalex.org/W2081580037","https://openalex.org/W2085037886","https://openalex.org/W2099754222","https://openalex.org/W2105562744","https://openalex.org/W2106391842","https://openalex.org/W2110256992","https://openalex.org/W2119002393","https://openalex.org/W2127069089","https://openalex.org/W2127795553","https://openalex.org/W2137052779","https://openalex.org/W2145578524","https://openalex.org/W2153349010","https://openalex.org/W2153838454","https://openalex.org/W2157658519","https://openalex.org/W2162151166","https://openalex.org/W2163485494","https://openalex.org/W2165428180","https://openalex.org/W2737403359","https://openalex.org/W2770261575","https://openalex.org/W2772934464","https://openalex.org/W2786016794","https://openalex.org/W2805978167","https://openalex.org/W2900359059","https://openalex.org/W2923713125","https://openalex.org/W2963432357","https://openalex.org/W2966787092","https://openalex.org/W2971558903","https://openalex.org/W3000075214","https://openalex.org/W3007807538","https://openalex.org/W3030111404","https://openalex.org/W3136918052","https://openalex.org/W4211208250","https://openalex.org/W4231824804"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W2120890012","https://openalex.org/W4283723149","https://openalex.org/W15348386","https://openalex.org/W2286239702","https://openalex.org/W782572168","https://openalex.org/W1982109448","https://openalex.org/W47355381","https://openalex.org/W2028703400"],"abstract_inverted_index":{"Knowledge":[0],"graphs":[1,99],"became":[2],"a":[3,69,86,147,154,165,175,213],"popular":[4],"means":[5],"for":[6,30,84,178],"modeling":[7],"complex":[8],"biological":[9,17,24,47,56,64,73,91,97,102,149,162,196],"systems":[10],"where":[11],"they":[12],"model":[13,89],"the":[14,23,50,53,118,124,129,205,219,230],"interactions":[15],"between":[16,46],"entities":[18],"and":[19,41,59,82,95,127,143,181,228,240],"their":[20],"effects":[21],"on":[22,90,138,218],"system.":[25],"They":[26],"also":[27,173],"provide":[28,38,174,212],"support":[29],"relational":[31,87,136,158,231],"learning":[32,61,88,137,232],"models":[33,62,233],"which":[34,152,186],"are":[35],"known":[36],"to":[37,93,190,203,226,238],"highly":[39],"scalable":[40],"accurate":[42],"predictions":[43],"of":[44,52,55,71,116,123,131,156,208,215],"associations":[45],"entities.":[48],"Despite":[49],"success":[51],"combination":[54],"knowledge":[57,74,98,150,193],"graph":[58,75,151,194],"relation":[60],"in":[63,114,164,234],"predictive":[65],"tasks,":[66],"there":[67],"is":[68,106],"lack":[70],"unified":[72,166],"resources.":[76],"This":[77,104],"forced":[78],"all":[79],"current":[80],"efforts":[81],"studies":[83],"applying":[85],"data":[92,140,159,197,221],"compile":[94],"build":[96],"from":[100,160,183,198],"open":[101,161],"databases.":[103],"process":[105],"often":[107],"performed":[108],"inconsistently":[109],"across":[110],"such":[111],"efforts,":[112],"especially":[113],"terms":[115],"choosing":[117],"original":[119],"resources,":[120],"aligning":[121],"identifiers":[122,180],"different":[125,184],"databases,":[126],"assessing":[128],"quality":[130],"included":[132],"data.":[133],"To":[134],"make":[135],"biomedical":[139],"more":[141],"standardised":[142],"reproducible,":[144],"we":[145,211],"propose":[146],"new":[148,176],"provides":[153],"compilation":[155],"curated":[157],"databases":[163,185],"format":[167],"with":[168,195],"common,":[169],"interlinked":[170],"identifiers.":[171],"We":[172],"module":[177],"mapping":[179],"labels":[182],"can":[187,223],"be":[188,224],"used":[189,225],"align":[191],"our":[192,209],"other":[199],"heterogeneous":[200],"sources.":[201],"Finally,":[202],"illustrate":[204],"practical":[206],"relevance":[207],"work,":[210],"set":[214],"benchmarks":[216],"based":[217],"presented":[220],"that":[222],"train":[227],"assess":[229],"various":[235],"tasks":[236],"related":[237],"pathway":[239],"drug":[241],"discovery.":[242]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":25},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2020-10-29T00:00:00"}
