{"id":"https://openalex.org/W2967471010","doi":"https://doi.org/10.1145/3336294.3336298","title":"DNA as Features","display_name":"DNA as Features","publication_year":2019,"publication_date":"2019-08-08","ids":{"openalex":"https://openalex.org/W2967471010","doi":"https://doi.org/10.1145/3336294.3336298","mag":"2967471010"},"language":"en","primary_location":{"id":"doi:10.1145/3336294.3336298","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3336294.3336298","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3336294.3336298","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 23rd International Systems and Software Product Line Conference - Volume A","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3336294.3336298","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087768840","display_name":"Mikaela Cashman","orcid":"https://orcid.org/0000-0003-0620-7830"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mikaela Cashman","raw_affiliation_strings":["Iowa State University"],"affiliations":[{"raw_affiliation_string":"Iowa State University","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077512724","display_name":"Justin Firestone","orcid":"https://orcid.org/0000-0002-1927-2036"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Firestone","raw_affiliation_strings":["University of Nebraska-Lincoln"],"affiliations":[{"raw_affiliation_string":"University of Nebraska-Lincoln","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020147981","display_name":"Myra B. Cohen","orcid":"https://orcid.org/0000-0003-2443-2425"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Myra B. Cohen","raw_affiliation_strings":["Iowa State University"],"affiliations":[{"raw_affiliation_string":"Iowa State University","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030470495","display_name":"Thammasak Thianniwet","orcid":"https://orcid.org/0000-0003-3917-2048"},"institutions":[{"id":"https://openalex.org/I82475049","display_name":"Suranaree University of Technology","ror":"https://ror.org/05sgb8g78","country_code":"TH","type":"education","lineage":["https://openalex.org/I82475049"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Thammasak Thianniwet","raw_affiliation_strings":["Suranaree University of Technology, Nakhon Ratchasima, Thailand"],"affiliations":[{"raw_affiliation_string":"Suranaree University of Technology, Nakhon Ratchasima, Thailand","institution_ids":["https://openalex.org/I82475049"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003751904","display_name":"Wei Niu","orcid":"https://orcid.org/0000-0003-3826-1276"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Niu","raw_affiliation_strings":["University of Nebraska-Lincoln"],"affiliations":[{"raw_affiliation_string":"University of Nebraska-Lincoln","institution_ids":["https://openalex.org/I114395901"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5087768840"],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":null,"apc_paid":null,"fwci":0.1718,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.52909356,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"108","last_page":"118"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5383085012435913}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5383085012435913}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3336294.3336298","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3336294.3336298","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3336294.3336298","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 23rd International Systems and Software Product Line Conference - Volume A","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3336294.3336298","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3336294.3336298","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3336294.3336298","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 23rd International Systems and Software Product Line Conference - Volume A","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G2017948444","display_name":null,"funder_award_id":"CBET 1805528","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5358678105","display_name":null,"funder_award_id":"1805528","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5391736852","display_name":null,"funder_award_id":"1805528","funder_id":"https://openalex.org/F4320337390","funder_display_name":"Division of Chemical, Bioengineering, Environmental, and Transport Systems"},{"id":"https://openalex.org/G6401353277","display_name":null,"funder_award_id":"CCF-1901543","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G739027561","display_name":null,"funder_award_id":"2016-R2-CX-0023","funder_id":"https://openalex.org/F4320337430","funder_display_name":"National Institute of Justice"},{"id":"https://openalex.org/G973315471","display_name":null,"funder_award_id":"CCF 1901543","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309381","display_name":"Emory University","ror":"https://ror.org/03czfpz43"},{"id":"https://openalex.org/F4320309835","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40"},{"id":"https://openalex.org/F4320337390","display_name":"Division of Chemical, Bioengineering, Environmental, and Transport Systems","ror":"https://ror.org/0471zv972"},{"id":"https://openalex.org/F4320337430","display_name":"National Institute of Justice","ror":"https://ror.org/00v8p7w89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2967471010.pdf","grobid_xml":"https://content.openalex.org/works/W2967471010.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W73845772","https://openalex.org/W1486061410","https://openalex.org/W1501652040","https://openalex.org/W1547743088","https://openalex.org/W1645305843","https://openalex.org/W1979922504","https://openalex.org/W1991242334","https://openalex.org/W1992710424","https://openalex.org/W1993546274","https://openalex.org/W1994028898","https://openalex.org/W2004336532","https://openalex.org/W2008288008","https://openalex.org/W2013161783","https://openalex.org/W2022186026","https://openalex.org/W2042352676","https://openalex.org/W2044880359","https://openalex.org/W2046804150","https://openalex.org/W2048064553","https://openalex.org/W2086585198","https://openalex.org/W2094781369","https://openalex.org/W2122796178","https://openalex.org/W2128967738","https://openalex.org/W2134759932","https://openalex.org/W2153517004","https://openalex.org/W2317153111","https://openalex.org/W2330245166","https://openalex.org/W2333320475","https://openalex.org/W2336690709","https://openalex.org/W2400979282","https://openalex.org/W2522151783","https://openalex.org/W2523946319","https://openalex.org/W2737153105","https://openalex.org/W2888543360","https://openalex.org/W2937567255","https://openalex.org/W2964279195","https://openalex.org/W3103009943"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"Software":[0],"product":[1,24,84,171],"line":[2,25,85,172],"engineering":[3,26,86,108,173],"is":[4],"a":[5,98,106],"best":[6],"practice":[7],"for":[8,154],"managing":[9],"reuse":[10,94],"in":[11,27,177],"families":[12,69,153],"of":[13,23,32,62,70,74,116,134],"software":[14],"systems.":[15],"In":[16,35],"this":[17,102,178],"work,":[18],"we":[19,81,104,146],"explore":[20],"the":[21,28],"use":[22],"emerging":[29],"programming":[30],"domain":[31,107],"synthetic":[33,36,89,164],"biology.":[34],"biology,":[37],"living":[38],"organisms":[39],"are":[40,52,68,124],"programmed":[41],"to":[42,87,126,139],"perform":[43,105],"new":[44],"functions":[45],"or":[46],"improve":[47],"existing":[48,163],"functions.":[49,158],"These":[50],"programs":[51],"designed":[53],"and":[54,76,80,93,129,168],"constructed":[55],"using":[56],"small":[57],"building":[58],"blocks":[59],"made":[60],"out":[61],"DNA.":[63],"We":[64,123,143,159],"conjecture":[65],"that":[66,72,111,145],"there":[67],"products":[71],"consist":[73],"common":[75],"variable":[77],"DNA":[78,121],"parts,":[79],"can":[82,136,147,174],"leverage":[83],"help":[88],"biologists":[90],"build,":[91],"evolve,":[92],"these":[95],"programs.":[96,142],"As":[97],"first":[99],"step":[100],"towards":[101],"goal,":[103],"case":[109,166],"study":[110,167],"leverages":[112],"an":[113,162],"open-source":[114],"repository":[115],"more":[117],"than":[118],"45,000":[119],"reusable":[120],"parts.":[122],"able":[125],"identify":[127],"features":[128],"their":[130],"related":[131],"artifacts,":[132],"all":[133],"which":[135],"be":[137,175],"composed":[138],"make":[140],"different":[141],"demonstrate":[144,169],"successfully":[148],"build":[149],"feature":[150],"models":[151],"representing":[152],"two":[155],"commonly":[156],"engineered":[157],"then":[160],"analyze":[161],"biology":[165],"how":[170],"beneficial":[176],"domain.":[179]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2019-08-22T00:00:00"}
