{"id":"https://openalex.org/W2964680656","doi":"https://doi.org/10.1145/3332186.3333259","title":"LSU Computational System Biology Gateway for Education","display_name":"LSU Computational System Biology Gateway for Education","publication_year":2019,"publication_date":"2019-07-28","ids":{"openalex":"https://openalex.org/W2964680656","doi":"https://doi.org/10.1145/3332186.3333259","mag":"2964680656"},"language":"en","primary_location":{"id":"doi:10.1145/3332186.3333259","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3332186.3333259","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3332186.3333259","source":{"id":"https://openalex.org/S4306524297","display_name":"Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3332186.3333259","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Eroma Abeysinghe","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eroma Abeysinghe","raw_affiliation_strings":["Science Gateways Research Center, Pervasive Technology Institute, Indiana University Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Science Gateways Research Center, Pervasive Technology Institute, Indiana University Bloomington, Indiana","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033579800","display_name":"Micha\u0142 Bryli\u0144ski","orcid":"https://orcid.org/0000-0002-6204-2869"},"institutions":[{"id":"https://openalex.org/I121820613","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57","country_code":"US","type":"education","lineage":["https://openalex.org/I121820613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michal Brylinski","raw_affiliation_strings":["Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana","institution_ids":["https://openalex.org/I121820613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027985692","display_name":"Marcus Christie","orcid":"https://orcid.org/0000-0001-5458-9947"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcus Christie","raw_affiliation_strings":["Science Gateways Research Center, Pervasive Technology Institute, Indiana University Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Science Gateways Research Center, Pervasive Technology Institute, Indiana University Bloomington, Indiana","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037778136","display_name":"Suresh Marru","orcid":"https://orcid.org/0000-0002-6374-095X"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suresh Marru","raw_affiliation_strings":["Science Gateways Research Center, Pervasive Technology Institute, Indiana University Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Science Gateways Research Center, Pervasive Technology Institute, Indiana University Bloomington, Indiana","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082786549","display_name":"Marlon Pierce","orcid":"https://orcid.org/0000-0002-9582-5712"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marlon Pierce","raw_affiliation_strings":["Science Gateways Research Center, Pervasive Technology Institute, Indiana University Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Science Gateways Research Center, Pervasive Technology Institute, Indiana University Bloomington, Indiana","institution_ids":["https://openalex.org/I4210119109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.7737,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.91947732,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9779000282287598,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gateway","display_name":"Gateway (web page)","score":0.8153793811798096},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7316407561302185},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6102321147918701},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5150284767150879},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4562084376811981},{"id":"https://openalex.org/keywords/work","display_name":"Work (physics)","score":0.4316248893737793},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.43147727847099304},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.41444191336631775},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.37262582778930664},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.17988130450248718},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11995431780815125}],"concepts":[{"id":"https://openalex.org/C2777710495","wikidata":"https://www.wikidata.org/wiki/Q5527195","display_name":"Gateway (web page)","level":2,"score":0.8153793811798096},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7316407561302185},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6102321147918701},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5150284767150879},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4562084376811981},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.4316248893737793},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.43147727847099304},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.41444191336631775},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.37262582778930664},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.17988130450248718},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11995431780815125},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3332186.3333259","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3332186.3333259","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3332186.3333259","source":{"id":"https://openalex.org/S4306524297","display_name":"Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning)","raw_type":"proceedings-article"},{"id":"pmh:oai:digitalcommons.lsu.edu:biosci_pubs-1613","is_oa":true,"landing_page_url":"https://digitalcommons.lsu.edu/biosci_pubs/614","pdf_url":null,"source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"},{"id":"pmh:oai:repository.lsu.edu:biosci_pubs-5841","is_oa":true,"landing_page_url":"https://repository.lsu.edu/biosci_pubs/4835","pdf_url":null,"source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Publications","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1145/3332186.3333259","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3332186.3333259","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3332186.3333259","source":{"id":"https://openalex.org/S4306524297","display_name":"Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning)","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6892638963","display_name":null,"funder_award_id":"1547611","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7726553634","display_name":null,"funder_award_id":"1339774","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310395","display_name":"Louisiana State University","ror":"https://ror.org/05ect4e57"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2964680656.pdf","grobid_xml":"https://content.openalex.org/works/W2964680656.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1004511050","https://openalex.org/W1569656372","https://openalex.org/W1982309045","https://openalex.org/W1997037174","https://openalex.org/W2014374038","https://openalex.org/W2052422361","https://openalex.org/W2059981954","https://openalex.org/W2070679139","https://openalex.org/W2083589318","https://openalex.org/W2089375051","https://openalex.org/W2129154270","https://openalex.org/W2130986318","https://openalex.org/W2161692857","https://openalex.org/W2297106365","https://openalex.org/W2602318385","https://openalex.org/W2608351113","https://openalex.org/W2725432521","https://openalex.org/W2822499119","https://openalex.org/W2836575766","https://openalex.org/W2857907774","https://openalex.org/W2979463162"],"related_works":["https://openalex.org/W2384867379","https://openalex.org/W4400094300","https://openalex.org/W2329539859","https://openalex.org/W2227905990","https://openalex.org/W2765823764","https://openalex.org/W3214280620","https://openalex.org/W3191490922","https://openalex.org/W2794038527","https://openalex.org/W2327638088","https://openalex.org/W2151092287"],"abstract_inverted_index":{"Science":[0],"gateways":[1,90],"are":[2,91,128],"a":[3,10,28,99,108,124,132,181],"mechanism":[4],"for":[5,68,166],"delivering":[6],"scientific":[7,61],"software":[8,15,45],"as":[9,94,107],"service,":[11],"especially":[12],"when":[13],"the":[14,32,121,153,160,167],"requires":[16],"high":[17],"performance":[18],"computing":[19],"(HPC)":[20],"resources":[21],"to":[22,35,37,43,81,101,110,130,135,137,179],"run":[23],"effectively.":[24],"The":[25],"existence":[26],"of":[27,60,75,123,190],"science":[29,89,125],"gateway":[30,165],"eliminates":[31],"user's":[33],"need":[34,131],"learn":[36,136],"work":[38,138,186],"with":[39,139],"HPC":[40,140],"systems":[41],"and":[42,47,63,71,142,177],"manage":[44,65],"installations":[46],"updates.":[48],"With":[49],"well-designed":[50],"user":[51],"interfaces,":[52],"users":[53,59,80],"can":[54,64],"more":[55,83],"quickly":[56,113],"become":[57],"effective":[58,96],"applications":[62],"information":[66],"needed":[67],"replicating,":[69],"modifying,":[70],"sharing":[72],"results.":[73],"All":[74],"these":[76],"efficiency":[77],"gains":[78],"enable":[79],"focus":[82],"on":[84,116,146,152],"their":[85,150],"research.":[86],"In":[87,120],"addition,":[88],"being":[92],"identified":[93],"an":[95],"educational":[97],"tool,":[98],"tool":[100],"be":[102,180],"used":[103],"in":[104],"classroom":[105,182],"environments":[106],"method":[109],"get":[111],"students":[112,127],"into":[114],"research":[115],"domain":[117],"specific":[118],"questions.":[119],"absence":[122],"gateway,":[126],"likely":[129],"considerable":[133],"time":[134,144,151],"systems,":[141],"any":[143],"spent":[145],"such":[147],"will":[148],"reduce":[149],"actual":[154],"science.":[155],"This":[156,185],"poster":[157],"presents":[158],"how":[159],"Louisiana":[161],"State":[162],"University":[163],"(LSU)":[164],"Computational":[168],"System":[169],"Biology":[170],"Group":[171],"(CSBG)":[172],"-":[173],"(www.brylinski.org)":[174],"was":[175],"updated":[176],"improved":[178],"teaching":[183],"tool.":[184],"makes":[187],"extensive":[188],"use":[189],"Apache":[191],"Airavata's":[192],"group":[193],"management":[194],"capabilities.":[195]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
