{"id":"https://openalex.org/W2946699391","doi":"https://doi.org/10.1145/3331184.3331319","title":"Ontology-Aware Clinical Abstractive Summarization","display_name":"Ontology-Aware Clinical Abstractive Summarization","publication_year":2019,"publication_date":"2019-07-18","ids":{"openalex":"https://openalex.org/W2946699391","doi":"https://doi.org/10.1145/3331184.3331319","mag":"2946699391"},"language":"en","primary_location":{"id":"doi:10.1145/3331184.3331319","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3331184.3331319","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 42nd International ACM SIGIR Conference on Research and Development in Information Retrieval","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1905.05818","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014199889","display_name":"Sean MacAvaney","orcid":"https://orcid.org/0000-0002-8914-2659"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sean MacAvaney","raw_affiliation_strings":["Georgetown University, Washington, DC, USA","\u00a7 Georgetown University, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Georgetown University, Washington, DC, USA","institution_ids":["https://openalex.org/I184565670"]},{"raw_affiliation_string":"\u00a7 Georgetown University, Washington, DC, USA","institution_ids":["https://openalex.org/I184565670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037219190","display_name":"Sajad Sotudeh","orcid":"https://orcid.org/0000-0002-6653-1934"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sajad Sotudeh","raw_affiliation_strings":["Georgetown University, Washington, DC, USA","\u00a7 Georgetown University, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Georgetown University, Washington, DC, USA","institution_ids":["https://openalex.org/I184565670"]},{"raw_affiliation_string":"\u00a7 Georgetown University, Washington, DC, USA","institution_ids":["https://openalex.org/I184565670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064858748","display_name":"Arman Cohan","orcid":"https://orcid.org/0000-0002-8954-2724"},"institutions":[{"id":"https://openalex.org/I4210156221","display_name":"Allen Institute for Artificial Intelligence","ror":"https://ror.org/05w520734","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210156221"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arman Cohan","raw_affiliation_strings":["Allen Institute for Artificial Intelligence, Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"Allen Institute for Artificial Intelligence, Seattle, WA, USA","institution_ids":["https://openalex.org/I4210156221"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036610566","display_name":"Nazli Goharian","orcid":null},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nazli Goharian","raw_affiliation_strings":["Georgetown University, Washington, DC, USA","\u00a7 Georgetown University, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Georgetown University, Washington, DC, USA","institution_ids":["https://openalex.org/I184565670"]},{"raw_affiliation_string":"\u00a7 Georgetown University, Washington, DC, USA","institution_ids":["https://openalex.org/I184565670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042902336","display_name":"Ish Talati","orcid":null},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ish Talati","raw_affiliation_strings":["Georgetown University, Washington, DC, USA","\u00a7 Georgetown University, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Georgetown University, Washington, DC, USA","institution_ids":["https://openalex.org/I184565670"]},{"raw_affiliation_string":"\u00a7 Georgetown University, Washington, DC, USA","institution_ids":["https://openalex.org/I184565670"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014601549","display_name":"Ross W. Filice","orcid":"https://orcid.org/0000-0002-1142-3338"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]},{"id":"https://openalex.org/I2802534011","display_name":"MedStar Georgetown University Hospital","ror":"https://ror.org/03ja1ak26","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802534011","https://openalex.org/I86755215"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ross W. Filice","raw_affiliation_strings":["MedStar Georgetown University Hospital, Washington, DC, USA","Medstar Georgetown University Hospital Washington DC USA"],"affiliations":[{"raw_affiliation_string":"MedStar Georgetown University Hospital, Washington, DC, USA","institution_ids":["https://openalex.org/I2802534011","https://openalex.org/I184565670"]},{"raw_affiliation_string":"Medstar Georgetown University Hospital Washington DC USA","institution_ids":["https://openalex.org/I2802534011","https://openalex.org/I184565670"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5014199889"],"corresponding_institution_ids":["https://openalex.org/I184565670"],"apc_list":null,"apc_paid":null,"fwci":0.46085324,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.70124435,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1013","last_page":"1016"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.9213135242462158},{"id":"https://openalex.org/keywords/readability","display_name":"Readability","score":0.9056390523910522},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.824231743812561},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6616180539131165},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6243017911911011},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6229392290115356},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5853400230407715},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5654670000076294},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.543159544467926},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.48016801476478577},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4801137447357178},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34041839838027954}],"concepts":[{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.9213135242462158},{"id":"https://openalex.org/C2778143727","wikidata":"https://www.wikidata.org/wiki/Q1820650","display_name":"Readability","level":2,"score":0.9056390523910522},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.824231743812561},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6616180539131165},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6243017911911011},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6229392290115356},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5853400230407715},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5654670000076294},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.543159544467926},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.48016801476478577},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4801137447357178},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34041839838027954},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1145/3331184.3331319","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3331184.3331319","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 42nd International ACM SIGIR Conference on Research and Development in Information Retrieval","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1905.05818","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1905.05818","pdf_url":"https://arxiv.org/pdf/1905.05818","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"mag:2946699391","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/1905.05818.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1905.05818","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1905.05818","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1905.05818","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1905.05818","pdf_url":"https://arxiv.org/pdf/1905.05818","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[{"score":0.6000000238418579,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2946699391.pdf","grobid_xml":"https://content.openalex.org/works/W2946699391.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1484393529","https://openalex.org/W1843891098","https://openalex.org/W2030265142","https://openalex.org/W2064675550","https://openalex.org/W2130942839","https://openalex.org/W2152772232","https://openalex.org/W2606974598","https://openalex.org/W2612675303","https://openalex.org/W2798240283","https://openalex.org/W2889518897","https://openalex.org/W2891022667","https://openalex.org/W2914437773","https://openalex.org/W2949417144","https://openalex.org/W2963929190","https://openalex.org/W2964016842","https://openalex.org/W2964121744","https://openalex.org/W3101913037"],"related_works":["https://openalex.org/W2953486306","https://openalex.org/W3102489149","https://openalex.org/W3212398293","https://openalex.org/W3023578713","https://openalex.org/W3166148876","https://openalex.org/W3094090968","https://openalex.org/W3167123946","https://openalex.org/W2989575441","https://openalex.org/W3035643691","https://openalex.org/W3163695726","https://openalex.org/W3093960175","https://openalex.org/W3141940864","https://openalex.org/W3025777352","https://openalex.org/W3003908908","https://openalex.org/W3114369693","https://openalex.org/W2855233750","https://openalex.org/W3201255524","https://openalex.org/W2182139230","https://openalex.org/W3091889354","https://openalex.org/W3200639615"],"abstract_inverted_index":{"Automatically":[0],"generating":[1],"accurate":[2],"summaries":[3,77],"from":[4],"clinical":[5],"reports":[6,46],"could":[7],"save":[8],"a":[9,20,42,69],"clinician's":[10],"time,":[11],"improve":[12],"summary":[13,35],"coverage,":[14],"and":[15,34,47],"reduce":[16],"errors.":[17],"We":[18,37],"propose":[19],"sequence-to-sequence":[21],"abstractive":[22],"summarization":[23],"model":[24],"augmented":[25],"with":[26],"domain-specific":[27],"ontological":[28],"information":[29],"to":[30,41,82],"enhance":[31],"content":[32],"selection":[33],"generation.":[36],"apply":[38],"our":[39],"method":[40],"dataset":[43],"of":[44,61],"radiology":[45],"show":[48],"that":[49,73,78],"it":[50],"significantly":[51],"outperforms":[52],"the":[53],"current":[54],"state-of-the-art":[55],"on":[56],"this":[57,74],"task":[58],"in":[59],"terms":[60],"rouge":[62],"scores.":[63],"Extensive":[64],"human":[65],"evaluation":[66],"conducted":[67],"by":[68],"radiologist":[70],"further":[71],"indicates":[72],"approach":[75],"yields":[76],"are":[79],"less":[80],"likely":[81],"omit":[83],"important":[84],"details,":[85],"without":[86],"sacrificing":[87],"readability":[88],"or":[89],"accuracy.":[90]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-02-09T09:26:11.010843","created_date":"2025-10-10T00:00:00"}
