{"id":"https://openalex.org/W3006584487","doi":"https://doi.org/10.1145/3311790.3401776","title":"Deploying large fixed file datasets with SquashFS and Singularity","display_name":"Deploying large fixed file datasets with SquashFS and Singularity","publication_year":2020,"publication_date":"2020-07-22","ids":{"openalex":"https://openalex.org/W3006584487","doi":"https://doi.org/10.1145/3311790.3401776","mag":"3006584487"},"language":"en","primary_location":{"id":"doi:10.1145/3311790.3401776","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3311790.3401776","pdf_url":null,"source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2002.06129","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110335374","display_name":"Pierre Rioux","orcid":null},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]},{"id":"https://openalex.org/I1292859797","display_name":"Montreal Neurological Institute and Hospital","ror":"https://ror.org/05ghs6f64","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1292859797"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Pierre Rioux","raw_affiliation_strings":["Montreal Neurological Institute, Canada","McGill University"],"affiliations":[{"raw_affiliation_string":"Montreal Neurological Institute, Canada","institution_ids":["https://openalex.org/I1292859797"]},{"raw_affiliation_string":"McGill University","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053240953","display_name":"Gregory Kiar","orcid":"https://orcid.org/0000-0001-8915-496X"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]},{"id":"https://openalex.org/I1292859797","display_name":"Montreal Neurological Institute and Hospital","ror":"https://ror.org/05ghs6f64","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1292859797"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Gregory Kiar","raw_affiliation_strings":["Montreal Neurological Institite, Canada","McGill University"],"affiliations":[{"raw_affiliation_string":"Montreal Neurological Institite, Canada","institution_ids":["https://openalex.org/I1292859797"]},{"raw_affiliation_string":"McGill University","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046939572","display_name":"A. Hutton","orcid":"https://orcid.org/0000-0002-7661-686X"},"institutions":[{"id":"https://openalex.org/I1292859797","display_name":"Montreal Neurological Institute and Hospital","ror":"https://ror.org/05ghs6f64","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1292859797"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alexandre Hutton","raw_affiliation_strings":["Montreal Neurological Institute, Canada"],"affiliations":[{"raw_affiliation_string":"Montreal Neurological Institute, Canada","institution_ids":["https://openalex.org/I1292859797"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011305571","display_name":"Alan C. Evans","orcid":"https://orcid.org/0000-0003-3841-6098"},"institutions":[{"id":"https://openalex.org/I1292859797","display_name":"Montreal Neurological Institute and Hospital","ror":"https://ror.org/05ghs6f64","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1292859797"]},{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Alan C. Evans","raw_affiliation_strings":["Montreal Neurological Institute, Canada","[Pittsburgh Supercomputing Center]"],"affiliations":[{"raw_affiliation_string":"Montreal Neurological Institute, Canada","institution_ids":["https://openalex.org/I1292859797"]},{"raw_affiliation_string":"[Pittsburgh Supercomputing Center]","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068134371","display_name":"Shawn T. Brown","orcid":"https://orcid.org/0000-0001-6980-8372"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]},{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Shawn T. Brown","raw_affiliation_strings":["Pittsburgh Supercomputing Center, USA","McGill University"],"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center, USA","institution_ids":["https://openalex.org/I35765314"]},{"raw_affiliation_string":"McGill University","institution_ids":["https://openalex.org/I5023651"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5110335374"],"corresponding_institution_ids":["https://openalex.org/I1292859797","https://openalex.org/I5023651"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0301021,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"72","last_page":"76"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13553","display_name":"Age of Information Optimization","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8639323115348816},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7043956518173218},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.622502326965332},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5494621396064758},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.48714110255241394},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.4565041661262512},{"id":"https://openalex.org/keywords/file-system","display_name":"File system","score":0.4339315891265869},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4045088291168213},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2420397400856018},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2411421239376068}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8639323115348816},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7043956518173218},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.622502326965332},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5494621396064758},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.48714110255241394},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.4565041661262512},{"id":"https://openalex.org/C2780940931","wikidata":"https://www.wikidata.org/wiki/Q174989","display_name":"File system","level":2,"score":0.4339315891265869},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4045088291168213},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2420397400856018},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2411421239376068},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1145/3311790.3401776","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3311790.3401776","pdf_url":null,"source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:2002.06129","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2002.06129","pdf_url":"https://arxiv.org/pdf/2002.06129","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"mag:3006584487","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/2002.06129","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.2002.06129","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2002.06129","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2002.06129","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2002.06129","pdf_url":"https://arxiv.org/pdf/2002.06129","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G1156672080","display_name":null,"funder_award_id":"U54MH091657","funder_id":"https://openalex.org/F4320332884","funder_display_name":"McDonnell Center for Systems Neuroscience"},{"id":"https://openalex.org/G1658616865","display_name":null,"funder_award_id":"1U54MH091657","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2228721946","display_name":null,"funder_award_id":"1U54MH09165","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2540626194","display_name":null,"funder_award_id":"U54MH091657","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6934592148","display_name":null,"funder_award_id":"MH091657","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8299918676","display_name":null,"funder_award_id":"1U54MH091657","funder_id":"https://openalex.org/F4320332884","funder_display_name":"McDonnell Center for Systems Neuroscience"}],"funders":[{"id":"https://openalex.org/F4320326644","display_name":"Canada First Research Excellence Fund","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332884","display_name":"McDonnell Center for Systems Neuroscience","ror":"https://ror.org/01yc7t268"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3006584487.pdf","grobid_xml":"https://content.openalex.org/works/W3006584487.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W185463630","https://openalex.org/W1540879848","https://openalex.org/W1726261545","https://openalex.org/W1983208069","https://openalex.org/W1995978685","https://openalex.org/W2016060560","https://openalex.org/W2019699016","https://openalex.org/W2082704080","https://openalex.org/W2157917411","https://openalex.org/W2613409207","https://openalex.org/W2950059796","https://openalex.org/W4241074797"],"related_works":["https://openalex.org/W3043865438","https://openalex.org/W2142979434","https://openalex.org/W2549400288","https://openalex.org/W48626633","https://openalex.org/W3128576955","https://openalex.org/W2578143603","https://openalex.org/W3102850524","https://openalex.org/W2929499305","https://openalex.org/W2736164181","https://openalex.org/W3128522791","https://openalex.org/W2597212910","https://openalex.org/W2811296513","https://openalex.org/W2804636492","https://openalex.org/W1575777113","https://openalex.org/W2611127597","https://openalex.org/W2146387131","https://openalex.org/W3122383853","https://openalex.org/W2165804073","https://openalex.org/W1692937897","https://openalex.org/W2892073027"],"abstract_inverted_index":{"Shared":[0],"high-performance":[1],"computing":[2,180],"(HPC)":[3],"platforms,":[4],"such":[5],"as":[6,54],"those":[7],"provided":[8],"by":[9],"XSEDE":[10],"and":[11,64,76,83,105,119,173],"Compute":[12],"Canada,":[13],"enable":[14],"researchers":[15],"to":[16,61,117,152,160],"carry":[17],"out":[18],"large-scale":[19],"computational":[20],"experiments":[21],"at":[22],"a":[23,43,70],"fraction":[24],"of":[25,28,36,57,72,144,167,175],"the":[26,29,34,55,122,130,134,142,146,165,171],"cost":[27],"cloud.":[30],"Most":[31],"systems":[32,93],"require":[33,126],"use":[35],"distributed":[37],"filesystems":[38],"(e.g.":[39],"Lustre)":[40],"for":[41,170],"providing":[42,113],"highly":[44],"multi-user,":[45],"large":[46,86],"capacity":[47],"storage":[48],"environment.":[49],"These":[50],"suffer":[51],"performance":[52,96],"penalties":[53],"number":[56],"files":[58],"increases":[59],"due":[60],"network":[62],"contention":[63],"metadata":[65],"performance.":[66],"We":[67,163],"demonstrate":[68],"how":[69],"combination":[71],"two":[73],"technologies,":[74],"Singularity":[75],"SquashFS,":[77],"can":[78],"help":[79],"developers,":[80],"integrators,":[81],"architects,":[82],"scientists":[84],"deploy":[85],"datasets":[87,177],"(O(10M)":[88],"files)":[89],"on":[90,129],"these":[91],"shared":[92,179],"with":[94],"minimal":[95],"limitations.":[97],"The":[98],"proposed":[99],"integration":[100],"enables":[101],"more":[102],"efficient":[103],"access":[104,116],"indexing":[106],"than":[107],"normal":[108],"file-based":[109],"dataset":[110],"installations,":[111],"while":[112],"transparent":[114],"file":[115],"users":[118],"processes.":[120],"Furthermore,":[121],"approach":[123],"does":[124],"not":[125,150],"administrative":[127],"privileges":[128],"target":[131],"system.":[132],"While":[133],"examples":[135],"studied":[136],"here":[137],"have":[138],"been":[139],"taken":[140],"from":[141],"field":[143],"neuroimaging,":[145],"technologies":[147],"adopted":[148],"are":[149],"specific":[151],"that":[153],"field.":[154],"Currently,":[155],"this":[156,168],"solution":[157],"is":[158],"limited":[159],"read-only":[161],"datasets.":[162],"propose":[164],"adoption":[166],"technology":[169],"consumption":[172],"dissemination":[174],"community":[176],"across":[178],"resources.":[181]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
