{"id":"https://openalex.org/W3044681323","doi":"https://doi.org/10.1145/3311790.3399625","title":"Neuroscience Gateway Enabling Large Scale Modeling and Data Processing in Neuroscience Research","display_name":"Neuroscience Gateway Enabling Large Scale Modeling and Data Processing in Neuroscience Research","publication_year":2020,"publication_date":"2020-07-22","ids":{"openalex":"https://openalex.org/W3044681323","doi":"https://doi.org/10.1145/3311790.3399625","mag":"3044681323"},"language":"en","primary_location":{"id":"doi:10.1145/3311790.3399625","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3311790.3399625","pdf_url":null,"source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085502013","display_name":"Subhashini Sivagnanam","orcid":"https://orcid.org/0000-0002-9250-7823"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Subhashini Sivagnanam","raw_affiliation_strings":["University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California San Diego, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059902269","display_name":"Kenneth Yoshimoto","orcid":"https://orcid.org/0000-0002-7560-7507"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth Yoshimoto","raw_affiliation_strings":["University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California San Diego, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090459968","display_name":"Ted Carnevale","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ted Carnevale","raw_affiliation_strings":["Yale University, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Yale University, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062615980","display_name":"Dave Nadeau","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dave Nadeau","raw_affiliation_strings":["University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California San Diego, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069019155","display_name":"Martin Kandes","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin Kandes","raw_affiliation_strings":["University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California San Diego, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021422108","display_name":"Trevor J. Petersen","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Trevor Petersen","raw_affiliation_strings":["University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California San Diego, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026333994","display_name":"Dung Truong","orcid":"https://orcid.org/0000-0003-4540-3551"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dung Truong","raw_affiliation_strings":["University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California San Diego, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104030006","display_name":"Ramon Martinez","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramon Martinez","raw_affiliation_strings":["University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California San Diego, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083504756","display_name":"Arnaud Delorme","orcid":"https://orcid.org/0000-0002-0799-3557"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arnaud Delorme","raw_affiliation_strings":["University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California San Diego, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053345339","display_name":"Scott Makeig","orcid":"https://orcid.org/0000-0002-9048-8438"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott Makeig","raw_affiliation_strings":["University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California San Diego, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":null,"display_name":"Amit Majumdar","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amit Majumdar","raw_affiliation_strings":["University of California San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California San Diego, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"510","last_page":"513"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9855999946594238,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9855999946594238,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9592999815940857,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9212999939918518,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7878148555755615},{"id":"https://openalex.org/keywords/computational-neuroscience","display_name":"Computational neuroscience","score":0.6687046885490417},{"id":"https://openalex.org/keywords/cyberinfrastructure","display_name":"Cyberinfrastructure","score":0.6266158819198608},{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.575482964515686},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.5747010707855225},{"id":"https://openalex.org/keywords/gateway","display_name":"Gateway (web page)","score":0.5226285457611084},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.4901297986507416},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.48079147934913635},{"id":"https://openalex.org/keywords/terabyte","display_name":"Terabyte","score":0.45316803455352783},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4488506615161896},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.4318743348121643},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.42550382018089294},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3240085244178772},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21379736065864563},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.13686665892601013},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.13247430324554443},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09924641251564026}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7878148555755615},{"id":"https://openalex.org/C15286952","wikidata":"https://www.wikidata.org/wiki/Q8037925","display_name":"Computational neuroscience","level":2,"score":0.6687046885490417},{"id":"https://openalex.org/C2776397876","wikidata":"https://www.wikidata.org/wiki/Q1450531","display_name":"Cyberinfrastructure","level":2,"score":0.6266158819198608},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.575482964515686},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.5747010707855225},{"id":"https://openalex.org/C2777710495","wikidata":"https://www.wikidata.org/wiki/Q5527195","display_name":"Gateway (web page)","level":2,"score":0.5226285457611084},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.4901297986507416},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.48079147934913635},{"id":"https://openalex.org/C199683683","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Terabyte","level":2,"score":0.45316803455352783},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4488506615161896},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.4318743348121643},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.42550382018089294},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3240085244178772},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21379736065864563},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.13686665892601013},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.13247430324554443},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09924641251564026},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3311790.3399625","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3311790.3399625","pdf_url":null,"source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-03426075v1","is_oa":false,"landing_page_url":"https://hal.science/hal-03426075","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PEARC '20: Practice and Experience in Advanced Research Computing, Jul 2020, Portland OR USA, France. pp.510-513, &#x27E8;10.1145/3311790.3399625&#x27E9;","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5699999928474426,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G7653301722","display_name":null,"funder_award_id":"1458840, 1458495","funder_id":"https://openalex.org/F4320315254","funder_display_name":"Innovative Research Group Project of the National Natural Science Foundation of China"},{"id":"https://openalex.org/G7810307415","display_name":null,"funder_award_id":"R01EB023297, R24MH120037, U24EB029005","funder_id":"https://openalex.org/F4320306080","funder_display_name":"Foundation for the National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306080","display_name":"Foundation for the National Institutes of Health","ror":"https://ror.org/00k86s890"},{"id":"https://openalex.org/F4320315254","display_name":"Innovative Research Group Project of the National Natural Science Foundation of China","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1857624741","https://openalex.org/W2028302194","https://openalex.org/W2059194600","https://openalex.org/W2156004139","https://openalex.org/W2509721558","https://openalex.org/W2825777969","https://openalex.org/W2950613784","https://openalex.org/W3015760814","https://openalex.org/W4306664005","https://openalex.org/W6624253347"],"related_works":["https://openalex.org/W3044099482","https://openalex.org/W2324907508","https://openalex.org/W2898484142","https://openalex.org/W4385769909","https://openalex.org/W2495727781","https://openalex.org/W1991647999","https://openalex.org/W4252166826","https://openalex.org/W2506406097","https://openalex.org/W2887972576","https://openalex.org/W2324968893"],"abstract_inverted_index":{"The":[0],"Neuroscience":[1],"Gateway":[2],"(NSG)":[3],"has":[4,21,224,295],"been":[5,226,296],"serving":[6,298],"the":[7,129,197,215,218,253,280,300,337],"computational":[8,30,83,153,237,301],"neuroscience":[9,31,108,125,230,238,254,262,283,302,311,338,355],"community":[10,255,339],"over":[11],"seven":[12],"years":[13],"since":[14],"its":[15,23],"inception":[16],"in":[17,29,41,80,103,124,326],"early":[18],"2013.":[19],"It":[20],"fulfilled":[22],"original":[24],"goal":[25],"of":[26,69,87,120,131,134,162],"catalyzing":[27],"progress":[28],"by":[32,202],"reducing":[33],"technical":[34],"and":[35,43,59,63,73,97,111,137,149,160,166,180,182,268,274,340,351],"administrative":[36],"barriers":[37],"that":[38,155],"neuroscientists":[39],"face":[40],"accessing":[42],"using":[44,104],"high":[45,170],"performance":[46],"computing":[47,172],"(HPC)":[48],"resources":[49,68,174],"needed":[50],"for":[51,106,229,235,282,336],"large":[52,192],"scale":[53,152,269],"neuronal":[54],"modeling":[55],"projects":[56],"involving":[57],"tools":[58,273,278],"software":[60],"which":[61],"require":[62,169],"run":[64],"efficiently":[65],"on":[66,158,205],"HPC":[67],"XSEDE":[70],"(Extreme":[71],"Science":[72],"Engineering":[74],"Discovery":[75],"Environment).":[76],"In":[77,285],"recent":[78],"years,":[79],"addition":[81,327],"to":[82,190,256,320,328,346],"neuroscientists,":[84,92],"growing":[85],"numbers":[86],"experimentalists":[88],"such":[89,187],"as":[90,188,304,306],"cognitive":[91],"psychologists,":[93],"biomedical":[94],"researchers,":[95,312],"physicists":[96],"electrical":[98],"engineers":[99],"are":[100,156],"increasingly":[101],"interested":[102],"NSG":[105,141,206,223,234,258,281,294,319,343],"their":[107,236,270,277],"data":[109,135,165,185,193,201,212,219,243,308,349],"processing":[110,136,159,244,309,350],"analysis":[112,161],"needs.":[113],"We":[114],"also":[115],"notice":[116],"an":[117,259],"expanding":[118],"use":[119,183,233],"machine/deep":[121,138],"learning":[122,139,168,353],"approaches":[123],"research.":[126],"To":[127],"accommodate":[128,347],"needs":[130],"these":[132],"types":[133],"workloads":[140,154],"is":[142,249,344],"adding":[143],"new":[144],"cyberinfrastructure":[145],"(CI)":[146],"capabilities,":[147],"features":[148],"resources.":[150],"Large":[151],"focused":[157,310],"brain":[163],"image":[164],"machine":[167,352],"throughput":[171],"(HTC)":[173],"than":[175],"HPC,":[176],"utilize":[177],"commercial":[178],"cloud":[179],"GPUs,":[181],"various":[184],"functionalities,":[186],"ability":[189],"transfer/store":[191],"to/on":[194],"NSG,":[195],"validate":[196],"data,":[198,216],"process":[199],"same":[200],"multiple":[203],"users":[204,231],"provided":[207],"compute":[208],"resources,":[209],"publish":[210],"final":[211],"products,":[213],"visualize":[214],"search":[217],"etc.":[220],"Until":[221],"now,":[222,314],"primarily":[225,299],"a":[227,250,322,333],"resource":[228],"who":[232],"work":[239],"and,":[240],"more":[241,348],"recently,":[242],"workloads.":[245],"But":[246],"recently":[247],"there":[248],"demand":[251],"from":[252],"make":[257],"environment":[260,325],"where":[261],"tool":[263,323],"developers":[264,324],"can":[265],"test,":[266],"benchmark,":[267],"newly":[271],"developed":[272],"eventually":[275],"disseminate":[276],"via":[279],"users.":[284,356],"this":[286],"short":[287],"poster-paper":[288],"we":[289,317],"will":[290],"show":[291],"(i)":[292],"how":[293,316,342],"successfully":[297,331],"community,":[303],"well":[305],"some":[307],"until":[313],"(ii)":[315],"plan":[318],"be":[321],"it":[329],"already":[330],"being":[332],"science":[334],"gateway":[335],"(iii)":[341],"transforming":[345],"oriented":[354]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
