{"id":"https://openalex.org/W2972552429","doi":"https://doi.org/10.1145/3307339.3342167","title":"PPPred","display_name":"PPPred","publication_year":2019,"publication_date":"2019-09-04","ids":{"openalex":"https://openalex.org/W2972552429","doi":"https://doi.org/10.1145/3307339.3342167","mag":"2972552429"},"language":"en","primary_location":{"id":"doi:10.1145/3307339.3342167","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3307339.3342167","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032899160","display_name":"Morteza Pourreza Shahri","orcid":"https://orcid.org/0000-0002-2437-9153"},"institutions":[{"id":"https://openalex.org/I23732399","display_name":"Montana State University","ror":"https://ror.org/02w0trx84","country_code":"US","type":"education","lineage":["https://openalex.org/I23732399","https://openalex.org/I4210126032"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Morteza Pourreza Shahri","raw_affiliation_strings":["Montana State University, Bozeman, MT, USA"],"affiliations":[{"raw_affiliation_string":"Montana State University, Bozeman, MT, USA","institution_ids":["https://openalex.org/I23732399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027506836","display_name":"Gillian Reynolds","orcid":"https://orcid.org/0000-0001-6233-6915"},"institutions":[{"id":"https://openalex.org/I23732399","display_name":"Montana State University","ror":"https://ror.org/02w0trx84","country_code":"US","type":"education","lineage":["https://openalex.org/I23732399","https://openalex.org/I4210126032"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gillian Reynolds","raw_affiliation_strings":["Montana State University, Bozeman, MT, USA"],"affiliations":[{"raw_affiliation_string":"Montana State University, Bozeman, MT, USA","institution_ids":["https://openalex.org/I23732399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048819862","display_name":"Mandi M. Roe","orcid":"https://orcid.org/0000-0002-2715-0071"},"institutions":[{"id":"https://openalex.org/I23732399","display_name":"Montana State University","ror":"https://ror.org/02w0trx84","country_code":"US","type":"education","lineage":["https://openalex.org/I23732399","https://openalex.org/I4210126032"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mandi Marie Roe","raw_affiliation_strings":["Montana State University, Bozeman, MT, USA"],"affiliations":[{"raw_affiliation_string":"Montana State University, Bozeman, MT, USA","institution_ids":["https://openalex.org/I23732399"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010719226","display_name":"Indika Kahanda","orcid":"https://orcid.org/0000-0002-4536-6917"},"institutions":[{"id":"https://openalex.org/I23732399","display_name":"Montana State University","ror":"https://ror.org/02w0trx84","country_code":"US","type":"education","lineage":["https://openalex.org/I23732399","https://openalex.org/I4210126032"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Indika Kahanda","raw_affiliation_strings":["Montana State University, Bozeman, MT, USA"],"affiliations":[{"raw_affiliation_string":"Montana State University, Bozeman, MT, USA","institution_ids":["https://openalex.org/I23732399"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5032899160"],"corresponding_institution_ids":["https://openalex.org/I23732399"],"apc_list":null,"apc_paid":null,"fwci":0.4262,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.62006368,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"5","issue":null,"first_page":"414","last_page":"422"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9333000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.507532000541687}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.507532000541687}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3307339.3342167","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3307339.3342167","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6800000071525574,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1548905044","https://openalex.org/W1759990168","https://openalex.org/W2016928406","https://openalex.org/W2077566950","https://openalex.org/W2099188065","https://openalex.org/W2104768328","https://openalex.org/W2110279753","https://openalex.org/W2120433106","https://openalex.org/W2134469465","https://openalex.org/W2143353625","https://openalex.org/W2157628440","https://openalex.org/W2189079317","https://openalex.org/W2338565750","https://openalex.org/W2344539657","https://openalex.org/W2401045631","https://openalex.org/W2560058357","https://openalex.org/W2594818524","https://openalex.org/W2604990811","https://openalex.org/W2608970480","https://openalex.org/W2773306025","https://openalex.org/W2795129839","https://openalex.org/W2883380892","https://openalex.org/W2914746899","https://openalex.org/W4244393794","https://openalex.org/W4249703106"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"The":[0],"MEDLINE":[1],"database":[2,99],"provides":[3],"an":[4,132],"extensive":[5],"source":[6],"of":[7,17,21,47,54,59,80,101,104,126,150],"scientific":[8],"articles":[9,28],"and":[10,35,85,106,153],"heterogeneous":[11],"biomedical":[12,65,158],"information":[13],"in":[14],"the":[15,22,30,44,57,68,77,124],"form":[16],"unstructured":[18],"text.":[19],"One":[20],"most":[23],"important":[24],"knowledge":[25],"present":[26,112],"within":[27],"are":[29],"relations":[31,66,81],"between":[32],"human":[33,83,86],"proteins":[34,84,105],"their":[36],"phenotypes,":[37],"which":[38],"can":[39],"stay":[40],"hidden":[41],"due":[42],"to":[43,62],"exponential":[45],"growth":[46],"publications.":[48],"This":[49,147],"has":[50],"presented":[51],"a":[52,97,113,127,156],"range":[53],"opportunities":[55],"for":[56,76,122,162],"development":[58],"computational":[60],"methods":[61],"extract":[63],"these":[64],"from":[67],"articles.":[69],"However,":[70],"currently,":[71],"no":[72],"such":[73],"method":[74],"exists":[75],"automated":[78],"extraction":[79,152,160],"involving":[82],"phenotype":[87],"ontology":[88],"(HPO)":[89],"terms.":[90],"In":[91,108],"our":[92],"previous":[93],"work,":[94],"we":[95,111,138],"developed":[96,134],"comprehensive":[98],"composed":[100],"all":[102],"co-mentions":[103],"phenotypes.":[107],"this":[109],"study,":[110],"supervised":[114],"machine":[115],"learning":[116],"approach":[117,149],"called":[118],"PPPred":[119,141],"(Protein-Phenotype":[120],"Predictor)":[121],"classifying":[123],"validity":[125],"given":[128],"sentence-level":[129],"co-mention.":[130],"Using":[131],"in-house":[133],"gold":[135],"standard":[136],"dataset,":[137],"demonstrate":[139],"that":[140],"significantly":[142],"outperforms":[143],"several":[144],"baseline":[145],"methods.":[146],"two-step":[148],"co-mention":[151],"classification":[154],"constitutes":[155],"complete":[157],"relation":[159],"pipeline":[161],"extracting":[163],"protein-phenotype":[164],"relations.":[165]},"counts_by_year":[{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2019-09-19T00:00:00"}
