{"id":"https://openalex.org/W2909771700","doi":"https://doi.org/10.1145/3290688.3290741","title":"Integrating Biological Heuristics and Gene Expression Data for Gene Regulatory Network Inference","display_name":"Integrating Biological Heuristics and Gene Expression Data for Gene Regulatory Network Inference","publication_year":2019,"publication_date":"2019-01-14","ids":{"openalex":"https://openalex.org/W2909771700","doi":"https://doi.org/10.1145/3290688.3290741","mag":"2909771700"},"language":"en","primary_location":{"id":"doi:10.1145/3290688.3290741","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3290688.3290741","pdf_url":null,"source":{"id":"https://openalex.org/S4306524001","display_name":"Proceedings of the Australasian Computer Science Week Multiconference","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Australasian Computer Science Week Multiconference","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028568297","display_name":"Armita Zarnegar","orcid":"https://orcid.org/0000-0001-7100-8630"},"institutions":[{"id":"https://openalex.org/I57093077","display_name":"Swinburne University of Technology","ror":"https://ror.org/031rekg67","country_code":"AU","type":"education","lineage":["https://openalex.org/I57093077"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Armita Zarnegar","raw_affiliation_strings":["Swinburne University of Technology, Melbourne, Australia"],"affiliations":[{"raw_affiliation_string":"Swinburne University of Technology, Melbourne, Australia","institution_ids":["https://openalex.org/I57093077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011347476","display_name":"Herbert F. Jelinek","orcid":"https://orcid.org/0000-0001-5457-6193"},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Herbert F. Jelinek","raw_affiliation_strings":["Australian School of Advanced Medicine, Macquarie University, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Australian School of Advanced Medicine, Macquarie University, Sydney, Australia","institution_ids":["https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080095540","display_name":"Peter Vamplew","orcid":"https://orcid.org/0000-0002-8687-4424"},"institutions":[{"id":"https://openalex.org/I149672521","display_name":"Federation University","ror":"https://ror.org/05qbzwv83","country_code":"AU","type":"education","lineage":["https://openalex.org/I149672521"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Peter Vamplew","raw_affiliation_strings":["School of Science, Engineering and IT, Federation University, Australia"],"affiliations":[{"raw_affiliation_string":"School of Science, Engineering and IT, Federation University, Australia","institution_ids":["https://openalex.org/I149672521"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047791912","display_name":"Andrew Stranieri","orcid":"https://orcid.org/0000-0002-4415-5771"},"institutions":[{"id":"https://openalex.org/I149672521","display_name":"Federation University","ror":"https://ror.org/05qbzwv83","country_code":"AU","type":"education","lineage":["https://openalex.org/I149672521"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Andrew Stranieri","raw_affiliation_strings":["School of Science, Engineering and IT, Federation University, Victoria, Australia"],"affiliations":[{"raw_affiliation_string":"School of Science, Engineering and IT, Federation University, Victoria, Australia","institution_ids":["https://openalex.org/I149672521"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5028568297"],"corresponding_institution_ids":["https://openalex.org/I57093077"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.00410067,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.7001623511314392},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.6938983201980591},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6810561418533325},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.602039635181427},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5774297714233398},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5613632202148438},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5389291644096375},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.4582618176937103},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4131721258163452},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33637961745262146},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33157044649124146},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2874801754951477}],"concepts":[{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.7001623511314392},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.6938983201980591},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6810561418533325},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.602039635181427},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5774297714233398},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5613632202148438},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5389291644096375},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.4582618176937103},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4131721258163452},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33637961745262146},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33157044649124146},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2874801754951477},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3290688.3290741","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3290688.3290741","pdf_url":null,"source":{"id":"https://openalex.org/S4306524001","display_name":"Proceedings of the Australasian Computer Science Week Multiconference","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Australasian Computer Science Week Multiconference","raw_type":"proceedings-article"},{"id":"pmh:vital:14196","is_oa":false,"landing_page_url":"http://researchonline.federation.edu.au/vital/access/HandleResolver/1959.17/170554","pdf_url":null,"source":{"id":"https://openalex.org/S4306400234","display_name":"FedUni ResearchOnline (Federation University Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210158496","host_organization_name":"Australian Federation of University Women \u2013 South Australia","host_organization_lineage":["https://openalex.org/I4210158496"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:researchbank.swinburne.edu.au:a68fcc89-459b-4de7-b23d-a379d90ac6a7/1","is_oa":false,"landing_page_url":"http://hdl.handle.net/1959.3/447891","pdf_url":null,"source":{"id":"https://openalex.org/S4306401157","display_name":"Swinburne Research Bank (Swinburne University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I57093077","host_organization_name":"Swinburne University of Technology","host_organization_lineage":["https://openalex.org/I57093077"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the Australasian Computer Science Week Multiconference, (ACSW 2019), Macquarie University, Sydney, Australia, 29-31 January 2019, article no. 37","raw_type":""}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309622","display_name":"Harvard University","ror":"https://ror.org/03vek6s52"},{"id":"https://openalex.org/F4320320974","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98"},{"id":"https://openalex.org/F4320320977","display_name":"Flinders University","ror":"https://ror.org/01kpzv902"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1851422093","https://openalex.org/W1968512108","https://openalex.org/W1975032412","https://openalex.org/W2000132404","https://openalex.org/W2015271344","https://openalex.org/W2018962053","https://openalex.org/W2034784092","https://openalex.org/W2039393227","https://openalex.org/W2044525257","https://openalex.org/W2052815101","https://openalex.org/W2055945512","https://openalex.org/W2056254608","https://openalex.org/W2062029454","https://openalex.org/W2062533676","https://openalex.org/W2063389953","https://openalex.org/W2068805767","https://openalex.org/W2083045667","https://openalex.org/W2090867005","https://openalex.org/W2095634012","https://openalex.org/W2103903744","https://openalex.org/W2105800735","https://openalex.org/W2105805010","https://openalex.org/W2106474670","https://openalex.org/W2114937915","https://openalex.org/W2121365413","https://openalex.org/W2123106337","https://openalex.org/W2126669894","https://openalex.org/W2141956986","https://openalex.org/W2152227081","https://openalex.org/W2152941516","https://openalex.org/W2159646183","https://openalex.org/W2159993062","https://openalex.org/W2161467890","https://openalex.org/W2161922735","https://openalex.org/W2163296115","https://openalex.org/W2167190345","https://openalex.org/W2168312688","https://openalex.org/W2169053773","https://openalex.org/W2169950095","https://openalex.org/W2170704198","https://openalex.org/W2175370850","https://openalex.org/W3021035068","https://openalex.org/W3099289621","https://openalex.org/W3125904670"],"related_works":["https://openalex.org/W2381031055","https://openalex.org/W2366070815","https://openalex.org/W2560421304","https://openalex.org/W2950199998","https://openalex.org/W2951387065","https://openalex.org/W4385727351","https://openalex.org/W4306798985","https://openalex.org/W2010571965","https://openalex.org/W2002709996","https://openalex.org/W3128451840"],"abstract_inverted_index":{"Gene":[0],"Regulatory":[1],"Networks":[2],"(GRNs)":[3],"offer":[4],"enhanced":[5],"insight":[6],"into":[7,43],"the":[8,51,58],"biological":[9],"functions":[10],"and":[11,29,56,61],"biochemical":[12],"pathways":[13],"of":[14],"cells":[15],"associated":[16],"with":[17],"gene":[18,27],"regulatory":[19],"mechanisms.":[20],"However,":[21],"obtaining":[22],"accurate":[23],"GRNs":[24],"that":[25],"explain":[26],"expressions":[28],"functional":[30],"associations":[31],"remains":[32],"a":[33,37,44],"difficult":[34],"task.":[35],"Only":[36],"few":[38],"studies":[39],"have":[40],"incorporated":[41],"heuristics":[42],"GRN":[45],"discovery":[46],"process.":[47],"Doing":[48],"so":[49],"has":[50],"potential":[52],"to":[53],"improve":[54],"accuracy":[55],"reduce":[57],"search":[59],"space":[60],"computational":[62],"time.":[63]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
