{"id":"https://openalex.org/W2891713251","doi":"https://doi.org/10.1145/3242840.3242848","title":"Efficient Bioinformatics Computations through GPU Accelerated Web Services","display_name":"Efficient Bioinformatics Computations through GPU Accelerated Web Services","publication_year":2018,"publication_date":"2018-07-27","ids":{"openalex":"https://openalex.org/W2891713251","doi":"https://doi.org/10.1145/3242840.3242848","mag":"2891713251"},"language":"en","primary_location":{"id":"doi:10.1145/3242840.3242848","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3242840.3242848","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 2nd International Conference on Algorithms, Computing and Systems","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019627096","display_name":"Vijini Mallawaarachchi","orcid":"https://orcid.org/0000-0002-2651-8719"},"institutions":[{"id":"https://openalex.org/I195740183","display_name":"University of Moratuwa","ror":"https://ror.org/0491f5305","country_code":"LK","type":"education","lineage":["https://openalex.org/I195740183"]}],"countries":["LK"],"is_corresponding":false,"raw_author_name":"Vijini Mallawaarachchi","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka","institution_ids":["https://openalex.org/I195740183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039351950","display_name":"Anuradha Wickramarachchi","orcid":"https://orcid.org/0000-0003-4160-5965"},"institutions":[{"id":"https://openalex.org/I195740183","display_name":"University of Moratuwa","ror":"https://ror.org/0491f5305","country_code":"LK","type":"education","lineage":["https://openalex.org/I195740183"]}],"countries":["LK"],"is_corresponding":false,"raw_author_name":"Anuradha Wickramarachchi","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka","institution_ids":["https://openalex.org/I195740183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103216948","display_name":"Anuradha Welivita","orcid":"https://orcid.org/0000-0003-0181-8675"},"institutions":[{"id":"https://openalex.org/I195740183","display_name":"University of Moratuwa","ror":"https://ror.org/0491f5305","country_code":"LK","type":"education","lineage":["https://openalex.org/I195740183"]}],"countries":["LK"],"is_corresponding":false,"raw_author_name":"Anuradha Welivita","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka","institution_ids":["https://openalex.org/I195740183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008036750","display_name":"Indika Perera","orcid":"https://orcid.org/0000-0001-5660-248X"},"institutions":[{"id":"https://openalex.org/I195740183","display_name":"University of Moratuwa","ror":"https://ror.org/0491f5305","country_code":"LK","type":"education","lineage":["https://openalex.org/I195740183"]}],"countries":["LK"],"is_corresponding":false,"raw_author_name":"Indika Perera","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka","institution_ids":["https://openalex.org/I195740183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020197064","display_name":"Dulani Meedeniya","orcid":"https://orcid.org/0000-0002-4520-3819"},"institutions":[{"id":"https://openalex.org/I195740183","display_name":"University of Moratuwa","ror":"https://ror.org/0491f5305","country_code":"LK","type":"education","lineage":["https://openalex.org/I195740183"]}],"countries":["LK"],"is_corresponding":false,"raw_author_name":"Dulani Meedeniya","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Moratuwa, Sri Lanka","institution_ids":["https://openalex.org/I195740183"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I195740183"],"apc_list":null,"apc_paid":null,"fwci":5.6365,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.95492228,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"94","last_page":"98"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.852737307548523},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.7469984292984009},{"id":"https://openalex.org/keywords/graphics-processing-unit","display_name":"Graphics processing unit","score":0.6597923040390015},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.5566459894180298},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5260648131370544},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.49884653091430664},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.4868909418582916},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.42498496174812317},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.42295193672180176},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4197229743003845},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4128116965293884},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.364324688911438},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.30671218037605286},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.221657395362854},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.19150584936141968},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.14950469136238098}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.852737307548523},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.7469984292984009},{"id":"https://openalex.org/C2779851693","wikidata":"https://www.wikidata.org/wiki/Q183484","display_name":"Graphics processing unit","level":2,"score":0.6597923040390015},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.5566459894180298},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5260648131370544},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.49884653091430664},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.4868909418582916},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.42498496174812317},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.42295193672180176},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4197229743003845},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4128116965293884},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.364324688911438},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.30671218037605286},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.221657395362854},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.19150584936141968},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14950469136238098},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3242840.3242848","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3242840.3242848","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 2nd International Conference on Algorithms, Computing and Systems","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W786414397","https://openalex.org/W1441654383","https://openalex.org/W1996925142","https://openalex.org/W2011652244","https://openalex.org/W2015831381","https://openalex.org/W2024872854","https://openalex.org/W2037748100","https://openalex.org/W2055043387","https://openalex.org/W2065461987","https://openalex.org/W2090273865","https://openalex.org/W2096041635","https://openalex.org/W2113669223","https://openalex.org/W2116508956","https://openalex.org/W2120644107","https://openalex.org/W2123179625","https://openalex.org/W2136482257","https://openalex.org/W2142678478","https://openalex.org/W2168103533","https://openalex.org/W2295862081","https://openalex.org/W2771616701","https://openalex.org/W4250981202"],"related_works":["https://openalex.org/W1973046741","https://openalex.org/W2983282793","https://openalex.org/W1963859303","https://openalex.org/W2364044215","https://openalex.org/W2389600408","https://openalex.org/W240129890","https://openalex.org/W3048701459","https://openalex.org/W2149078538","https://openalex.org/W2080146221","https://openalex.org/W2370314112"],"abstract_inverted_index":{"Web":[0],"services":[1,16,49,100,114],"have":[2],"become":[3],"a":[4,86,134],"common":[5],"means":[6],"of":[7,28,54,112,133,136,174],"addressing":[8],"distributed":[9],"task":[10],"execution.":[11],"There":[12],"are":[13,59,70],"several":[14],"such":[15],"available":[17],"at":[18],"present":[19],"that":[20],"cater":[21],"to":[22,34,38,46,62,88,95,115,148,153],"the":[23,26,55,74,110,131,158,172],"requirements":[24],"in":[25,106,130,146,163],"domain":[27],"bioinformatics.":[29],"However,":[30,79],"it":[31],"is":[32,128],"challenging":[33],"find":[35],"efforts":[36],"made":[37],"utilize":[39],"Graphics":[40],"Processing":[41],"Unit":[42],"(GPU)":[43],"accelerated":[44,118],"binaries":[45],"optimize":[47],"web":[48,99,113,137],"for":[50,121],"bioinformatics":[51,56,119],"analyses.":[52],"Most":[53],"related":[57,152],"algorithms":[58,91],"compute-intensive":[60,150],"due":[61],"their":[63],"exponential":[64],"time":[65],"complexities.":[66],"Corresponding":[67],"execution":[68],"times":[69],"further":[71],"increased":[72],"as":[73,171],"sequence":[75],"databases":[76],"grow":[77],"rapidly.":[78],"harnessing":[80],"parallel":[81],"computational":[82],"power":[83],"gives":[84],"us":[85,94],"pathway":[87],"execute":[89],"these":[90],"and":[92,143],"allows":[93],"obtain":[96],"results":[97,160],"from":[98],"more":[101],"efficiently.":[102],"The":[103],"work":[104],"presented":[105],"this":[107],"paper":[108],"demonstrates":[109],"utilization":[111],"provide":[116],"GPU":[117,142],"computations":[120],"analytical":[122],"purposes.":[123],"A":[124],"unified":[125],"service":[126],"platform":[127],"developed":[129],"form":[132],"collection":[135],"services.":[138],"It":[139],"utilizes":[140],"both":[141],"CPU":[144],"processing":[145],"order":[147],"perform":[149],"tasks":[151],"biological":[154],"data":[155],"analysis.":[156],"Furthermore,":[157],"evaluation":[159],"show":[161],"gains":[162],"speed":[164],"over":[165],"three":[166],"folds":[167],"with":[168],"improving":[169],"performance":[170],"length":[173],"queries":[175],"increases.":[176]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
