{"id":"https://openalex.org/W2889156115","doi":"https://doi.org/10.1145/3233547.3233726","title":"ROP","display_name":"ROP","publication_year":2018,"publication_date":"2018-08-15","ids":{"openalex":"https://openalex.org/W2889156115","doi":"https://doi.org/10.1145/3233547.3233726","mag":"2889156115"},"language":"en","primary_location":{"id":"doi:10.1145/3233547.3233726","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3233547.3233726","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017101305","display_name":"Serghei Mangul","orcid":"https://orcid.org/0000-0003-4770-3443"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I4210100321","display_name":"University of Santa Monica","ror":"https://ror.org/0145dtj11","country_code":"US","type":"education","lineage":["https://openalex.org/I4210100321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Serghei Mangul","raw_affiliation_strings":["University of California, Los Angeles, Santa Monica, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, Los Angeles, Santa Monica, CA, USA","institution_ids":["https://openalex.org/I161318765","https://openalex.org/I4210100321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103259898","display_name":"Harry Yang","orcid":"https://orcid.org/0000-0001-9125-5962"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I4210100321","display_name":"University of Santa Monica","ror":"https://ror.org/0145dtj11","country_code":"US","type":"education","lineage":["https://openalex.org/I4210100321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Harry Yang","raw_affiliation_strings":["University of California, Los Angeles, Santa Monica, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, Los Angeles, Santa Monica, CA, USA","institution_ids":["https://openalex.org/I161318765","https://openalex.org/I4210100321"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058484067","display_name":"Noah Zaitlen","orcid":"https://orcid.org/0000-0002-3553-3670"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Noah Zaitlen","raw_affiliation_strings":["University of California, San Francisco, San Francisco, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Francisco, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"573","last_page":"573"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6530698537826538},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6526455879211426},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6133439540863037},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5913679003715515},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.4751931428909302},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3447607159614563},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20148342847824097},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16593074798583984},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13366654515266418}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6530698537826538},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6526455879211426},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6133439540863037},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5913679003715515},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.4751931428909302},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3447607159614563},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20148342847824097},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16593074798583984},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13366654515266418}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3233547.3233726","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3233547.3233726","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1703384511","https://openalex.org/W1816176398","https://openalex.org/W1974764034","https://openalex.org/W2029525307","https://openalex.org/W2040839903","https://openalex.org/W2060842569","https://openalex.org/W2093253451","https://openalex.org/W2104005232","https://openalex.org/W2105776281","https://openalex.org/W2129714591","https://openalex.org/W2139399606","https://openalex.org/W2140729960","https://openalex.org/W2142678478","https://openalex.org/W2145214649","https://openalex.org/W2149573463","https://openalex.org/W2159038577","https://openalex.org/W2170486072","https://openalex.org/W2174943127","https://openalex.org/W2188890094","https://openalex.org/W2286014095","https://openalex.org/W2394816785","https://openalex.org/W2566567183","https://openalex.org/W2802816462","https://openalex.org/W6654787080","https://openalex.org/W6677105896"],"related_works":["https://openalex.org/W4394359997","https://openalex.org/W4362511652","https://openalex.org/W4362511917","https://openalex.org/W4362511922","https://openalex.org/W4362485688","https://openalex.org/W4362530184","https://openalex.org/W4362530193","https://openalex.org/W2904597490","https://openalex.org/W4362485661","https://openalex.org/W4394365953"],"abstract_inverted_index":{"High-throughput":[0],"RNA-sequencing":[1],"(RNA-seq)":[2],"technologies":[3],"provide":[4],"an":[5],"unprecedented":[6],"opportunity":[7],"to":[8,50,78],"explore":[9],"the":[10,37,80,86],"individual":[11],"transcriptome.":[12],"Unmapped":[13],"reads":[14,41,69],"are":[15],"a":[16,33],"large":[17],"and":[18,90],"often":[19],"overlooked":[20],"output":[21],"of":[22,39,66,70],"standard":[23],"RNA-seq":[24],"analyses.":[25],"Here,":[26],"we":[27,75],"present":[28],"Read":[29],"Origin":[30],"Protocol":[31],"(ROP),":[32],"tool":[34],"for":[35,64],"discovering":[36],"source":[38],"all":[40],"originating":[42],"from":[43,55],"complex":[44],"RNA":[45],"molecules.":[46],"We":[47],"apply":[48],"ROP":[49,77,92],"samples":[51],"across":[52],"2630":[53],"individuals":[54],"54":[56],"diverse":[57],"human":[58],"tissues.":[59],"Our":[60],"approach":[61],"can":[62],"account":[63],"99.9%":[65],"1":[67],"trillion":[68],"various":[71],"read":[72],"length.":[73],"Additionally,":[74],"use":[76],"investigate":[79],"functional":[81],"mechanisms":[82],"underlying":[83],"connections":[84],"between":[85],"immune":[87],"system,":[88],"microbiome,":[89],"disease.":[91],"is":[93],"freely":[94],"available":[95],"at":[96],"https://github.com/smangul1/rop/wiki.":[97]},"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2018-09-07T00:00:00"}
