{"id":"https://openalex.org/W2888457630","doi":"https://doi.org/10.1145/3233547.3233710","title":"MAPS","display_name":"MAPS","publication_year":2018,"publication_date":"2018-08-15","ids":{"openalex":"https://openalex.org/W2888457630","doi":"https://doi.org/10.1145/3233547.3233710","mag":"2888457630"},"language":"en","primary_location":{"id":"doi:10.1145/3233547.3233710","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3233547.3233710","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012140173","display_name":"Jinbu Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I186143895","display_name":"Lehigh University","ror":"https://ror.org/012afjb06","country_code":"US","type":"education","lineage":["https://openalex.org/I186143895"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinbu Wang","raw_affiliation_strings":["Lehigh University, Bethlehem, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lehigh University, Bethlehem, PA, USA","institution_ids":["https://openalex.org/I186143895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062182398","display_name":"Brian Y. Chen","orcid":"https://orcid.org/0000-0001-9025-0107"},"institutions":[{"id":"https://openalex.org/I186143895","display_name":"Lehigh University","ror":"https://ror.org/012afjb06","country_code":"US","type":"education","lineage":["https://openalex.org/I186143895"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Y. Chen","raw_affiliation_strings":["Lehigh University, Bethlehem, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lehigh University, Bethlehem, PA, USA","institution_ids":["https://openalex.org/I186143895"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I186143895"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"656","last_page":"662"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.6915848255157471},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.653532087802887},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5773671269416809},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5752298831939697},{"id":"https://openalex.org/keywords/mhc-class-i","display_name":"MHC class I","score":0.525732159614563},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5110605955123901},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.42732110619544983},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4228706955909729},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.4076244533061981},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3040953278541565},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20639389753341675}],"concepts":[{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.6915848255157471},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.653532087802887},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5773671269416809},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5752298831939697},{"id":"https://openalex.org/C170627219","wikidata":"https://www.wikidata.org/wiki/Q13218497","display_name":"MHC class I","level":4,"score":0.525732159614563},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5110605955123901},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.42732110619544983},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4228706955909729},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.4076244533061981},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3040953278541565},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20639389753341675},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3233547.3233710","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3233547.3233710","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7599999904632568,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1577290713","https://openalex.org/W1601149717","https://openalex.org/W1605679696","https://openalex.org/W1963516132","https://openalex.org/W1972621502","https://openalex.org/W1987105386","https://openalex.org/W1993279060","https://openalex.org/W1999022648","https://openalex.org/W2021002908","https://openalex.org/W2028623339","https://openalex.org/W2029993034","https://openalex.org/W2033536765","https://openalex.org/W2051103220","https://openalex.org/W2055132429","https://openalex.org/W2056043162","https://openalex.org/W2061720803","https://openalex.org/W2070410684","https://openalex.org/W2074222872","https://openalex.org/W2080303447","https://openalex.org/W2081400647","https://openalex.org/W2101772322","https://openalex.org/W2103498243","https://openalex.org/W2105119251","https://openalex.org/W2106612397","https://openalex.org/W2110574412","https://openalex.org/W2110694683","https://openalex.org/W2111091779","https://openalex.org/W2119761838","https://openalex.org/W2129612249","https://openalex.org/W2139425146","https://openalex.org/W2142636897","https://openalex.org/W2149350146","https://openalex.org/W2160303218","https://openalex.org/W2166908737","https://openalex.org/W2171781500","https://openalex.org/W2997591727","https://openalex.org/W2998649743"],"related_works":["https://openalex.org/W1840653008","https://openalex.org/W2977793531","https://openalex.org/W2023967363","https://openalex.org/W1939527068","https://openalex.org/W2126139339","https://openalex.org/W2168688111","https://openalex.org/W2070684866","https://openalex.org/W4281625971","https://openalex.org/W2094567316","https://openalex.org/W4200537437"],"abstract_inverted_index":{"The":[0],"adaptive":[1],"immune":[2,16],"system":[3,7],"is":[4,43,164],"a":[5,45],"defense":[6],"against":[8],"repeated":[9],"infection.":[10],"In":[11],"order":[12],"to":[13,39,74,119,167],"trigger":[14],"the":[15,21,29,58,64,79,105,116,122,138],"response,":[17],"antigen":[18],"peptides":[19,36],"from":[20],"infecting":[22],"agent":[23],"must":[24],"first":[25],"be":[26],"recognized":[27],"by":[28],"Major":[30],"Histocompatibility":[31],"Complex":[32],"(MHC)":[33],"proteins.":[34],"Identifying":[35],"that":[37,53,137,157],"bind":[38],"MHC":[40,117,130],"class":[41,131],"II":[42,132],"thus":[44],"critical":[46],"step":[47],"in":[48],"vaccine":[49],"development.":[50],"We":[51],"hypothesize":[52],"comparing":[54],"individual":[55,65,75,161],"subsites":[56,76,118,128,163],"of":[57,68,81,107,115,126,129],"peptide":[59],"binding":[60,123,162],"groove":[61],"could":[62,77],"predict":[63],"amino":[66],"acids":[67],"possible":[69],"antigens.":[70],"This":[71],"modularized":[72],"approach":[73],"reduce":[78],"amount":[80],"training":[82],"data":[83],"needed":[84],"for":[85,143,147],"accurate":[86,158],"classification":[87,109],"while":[88],"also":[89],"reducing":[90],"computing":[91],"times":[92],"associated":[93],"with":[94,149],"molecular":[95],"simulation":[96],"and":[97,111,145],"docking.":[98],"To":[99],"test":[100],"this":[101],"hypothesis,":[102],"we":[103],"evaluated":[104],"capability":[106],"two":[108],"techniques":[110],"multiple":[112],"modular":[113],"representations":[114],"correctly":[120],"classify":[121],"preference":[124],"categories":[125],"P1":[127],"structures.":[133],"Our":[134,154],"results":[135,155],"shows":[136],"average":[139],"accuracies":[140],"are":[141],"0.87":[142],"K-mean":[144],"0.95":[146],"SVM":[148],"all":[150],"feature":[151],"vector":[152],"configurations.":[153],"demonstrate":[156],"predictions":[159],"on":[160],"possible,":[165],"pointing":[166],"larger":[168],"scale":[169],"applications":[170],"predicting":[171],"whole-peptide":[172],"preferences.":[173]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2018-08-31T00:00:00"}
