{"id":"https://openalex.org/W2888246343","doi":"https://doi.org/10.1145/3233547.3233677","title":"SL-GLAlign","display_name":"SL-GLAlign","publication_year":2018,"publication_date":"2018-08-15","ids":{"openalex":"https://openalex.org/W2888246343","doi":"https://doi.org/10.1145/3233547.3233677","mag":"2888246343"},"language":"en","primary_location":{"id":"doi:10.1145/3233547.3233677","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3233547.3233677","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014008135","display_name":"Marianna Milano","orcid":"https://orcid.org/0000-0003-1561-725X"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Marianna Milano","raw_affiliation_strings":["University Magna Graecia, Catanzaro, Italy"],"affiliations":[{"raw_affiliation_string":"University Magna Graecia, Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028882289","display_name":"Wayne B. Hayes","orcid":"https://orcid.org/0000-0002-3310-6042"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wayne Hayes","raw_affiliation_strings":["University of California, Irvine, Irvine, CA, USA"],"affiliations":[{"raw_affiliation_string":"University of California, Irvine, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027369094","display_name":"Pierangelo Veltri","orcid":"https://orcid.org/0000-0003-2494-0294"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pierangelo Veltri","raw_affiliation_strings":["University Magna Graecia, Catanzaro, Italy"],"affiliations":[{"raw_affiliation_string":"University Magna Graecia, Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004845138","display_name":"Mario Cannataro","orcid":"https://orcid.org/0000-0003-1502-2387"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mario Cannataro","raw_affiliation_strings":["University Magna Graecia, Catanzaro, Italy"],"affiliations":[{"raw_affiliation_string":"University Magna Graecia, Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037399554","display_name":"Pietro Hiram Guzzi","orcid":"https://orcid.org/0000-0001-5542-2997"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pietro Hiram Guzzi","raw_affiliation_strings":["University Magna Graecia, Catanzaro, Italy"],"affiliations":[{"raw_affiliation_string":"University Magna Graecia, Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5014008135"],"corresponding_institution_ids":["https://openalex.org/I36443711"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0766233,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"577","last_page":"578"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.756022572517395},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.5532262325286865},{"id":"https://openalex.org/keywords/global-network","display_name":"Global network","score":0.5438239574432373},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5336378812789917},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5032376646995544},{"id":"https://openalex.org/keywords/simulated-annealing","display_name":"Simulated annealing","score":0.4979524612426758},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4744338095188141},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40725237131118774},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.38768017292022705},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33608460426330566},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.23031160235404968},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.14627793431282043},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.11991989612579346},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11341273784637451}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.756022572517395},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.5532262325286865},{"id":"https://openalex.org/C123138037","wikidata":"https://www.wikidata.org/wiki/Q5570871","display_name":"Global network","level":2,"score":0.5438239574432373},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5336378812789917},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5032376646995544},{"id":"https://openalex.org/C126980161","wikidata":"https://www.wikidata.org/wiki/Q863783","display_name":"Simulated annealing","level":2,"score":0.4979524612426758},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4744338095188141},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40725237131118774},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.38768017292022705},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33608460426330566},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.23031160235404968},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.14627793431282043},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.11991989612579346},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11341273784637451},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3233547.3233677","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3233547.3233677","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1966631994","https://openalex.org/W2016305540","https://openalex.org/W2024166504","https://openalex.org/W2043795984","https://openalex.org/W2074533336","https://openalex.org/W2101181377","https://openalex.org/W2140412523","https://openalex.org/W2569705007","https://openalex.org/W2623667213","https://openalex.org/W2801747814","https://openalex.org/W2951261390"],"related_works":["https://openalex.org/W4388311650","https://openalex.org/W5922282","https://openalex.org/W1974056099","https://openalex.org/W4245343541","https://openalex.org/W2386077341","https://openalex.org/W563589758","https://openalex.org/W62490179","https://openalex.org/W2954004777","https://openalex.org/W2951102138","https://openalex.org/W2379232404"],"abstract_inverted_index":{"The":[0,13],"alignment":[1,16,31,67,86,135],"of":[2,23,44,129,140],"biological":[3,11,148],"networks":[4,75],"enables":[5],"to":[6,19,34,61,64,79,90,136],"shed":[7],"light":[8],"on":[9,126,147],"important":[10],"information.":[12],"local":[14,142],"network":[15,30],"(LNA)":[17],"aims":[18,33],"discover":[20],"unique":[21],"sub-regions":[22],"similarity":[24],"among":[25],"networks,":[26],"while":[27],"the":[28,42,45,66,81,127,138,141],"global":[29,85,134],"(GNA)":[32],"find":[35],"large":[36],"conserved":[37],"regions":[38],"by":[39,115],"matching":[40],"all":[41],"nodes":[43],"input":[46,73],"networks.":[47,100,149],"Some":[48],"recent":[49],"works":[50],"demonstrated":[51],"that":[52,155],"two":[53],"approaches":[54],"are":[55],"complementary.":[56],"Thus":[57],"it":[58],"is":[59],"possible":[60],"combine":[62],"them":[63],"improve":[65],"performances.":[68],"LNA":[69],"algorithms":[70],"need":[71],"as":[72],"both":[74],"and":[76,110],"supplementary":[77],"information":[78,93,131],"start":[80],"process.":[82],"In":[83],"particular":[84],"may":[87],"be":[88],"used":[89],"produce":[91],"such":[92,104],"without":[94],"any":[95],"a":[96,122],"priori":[97],"knowledge":[98],"about":[99],"We":[101,144],"recently":[102],"explored":[103],"possibility.":[105],"Here,":[106],"we":[107],"here":[108],"extend":[109],"refine":[111],"our":[112],"previous":[113],"results":[114],"introducing":[116],"SL-GLAlign":[117,146,156],"(Simulated":[118],"Annealing-Global":[119],"Local":[120],"Aligner),":[121],"novel":[123],"methodology":[124],"based":[125],"use":[128],"topological":[130],"extracted":[132],"from":[133],"guide":[137],"building":[139],"alignment.":[143],"tested":[145],"Results":[150],"available":[151],"at":[152],"https://sites.google.com/view/sl-glalign/home":[153],"confirm":[154],"methodology.":[157]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2018-08-31T00:00:00"}
