{"id":"https://openalex.org/W2888062070","doi":"https://doi.org/10.1145/3233547.3233650","title":"Cloud-based Semantic Integration and Knowledge Discovery Systems in Precision Medicine","display_name":"Cloud-based Semantic Integration and Knowledge Discovery Systems in Precision Medicine","publication_year":2018,"publication_date":"2018-08-15","ids":{"openalex":"https://openalex.org/W2888062070","doi":"https://doi.org/10.1145/3233547.3233650","mag":"2888062070"},"language":"en","primary_location":{"id":"doi:10.1145/3233547.3233650","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3233547.3233650","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004336328","display_name":"Chuming Chen","orcid":"https://orcid.org/0000-0002-7287-9013"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chuming Chen","raw_affiliation_strings":["University of Delaware, Newark, DE, USA"],"affiliations":[{"raw_affiliation_string":"University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005968346","display_name":"Julie Cowart","orcid":"https://orcid.org/0000-0003-1916-4649"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julie E. Cowart","raw_affiliation_strings":["University of Delaware, Newark, DE, USA"],"affiliations":[{"raw_affiliation_string":"University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020539776","display_name":"Jia Ren","orcid":null},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jia Ren","raw_affiliation_strings":["University of Delaware, Newark, DE, USA"],"affiliations":[{"raw_affiliation_string":"University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085898345","display_name":"Sachin Gavali","orcid":"https://orcid.org/0000-0001-6118-9503"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sachin Gavali","raw_affiliation_strings":["University of Delaware, Newark, DE, USA"],"affiliations":[{"raw_affiliation_string":"University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100451675","display_name":"Yuqi Wang","orcid":"https://orcid.org/0000-0002-1703-3058"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuqi Wang","raw_affiliation_strings":["University of Delaware, Newark, DE, USA"],"affiliations":[{"raw_affiliation_string":"University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027838788","display_name":"Hongzhan Huang","orcid":"https://orcid.org/0000-0001-9594-9304"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongzhan Huang","raw_affiliation_strings":["University of Delaware, Newark, DE, USA"],"affiliations":[{"raw_affiliation_string":"University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053761444","display_name":"Cathy Wu","orcid":"https://orcid.org/0000-0001-6379-8601"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cathy H. Wu","raw_affiliation_strings":["University of Delaware, Newark, DE, USA"],"affiliations":[{"raw_affiliation_string":"University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006373586","display_name":"Leslie Arminski","orcid":null},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leslie Arminski","raw_affiliation_strings":["Georgetown University, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Georgetown University, Washington, DC, USA","institution_ids":["https://openalex.org/I184565670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103583158","display_name":"Jian Zhang","orcid":"https://orcid.org/0000-0002-8533-969X"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jian Zhang","raw_affiliation_strings":["Georgetown University, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Georgetown University, Washington, DC, USA","institution_ids":["https://openalex.org/I184565670"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082558927","display_name":"Peter B. McGarvey","orcid":"https://orcid.org/0000-0002-8312-6017"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter B. McGarvey","raw_affiliation_strings":["Georgetown University, Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Georgetown University, Washington, DC, USA","institution_ids":["https://openalex.org/I184565670"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5004336328"],"corresponding_institution_ids":["https://openalex.org/I86501945"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.07592945,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"542","last_page":"542"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9629999995231628,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8525313138961792},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7420385479927063},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6242226362228394},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5901627540588379},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5639225840568542},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5138599872589111},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4948531985282898},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.4428153336048126},{"id":"https://openalex.org/keywords/ibm","display_name":"IBM","score":0.4422690272331238},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.4380662441253662},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.42609232664108276},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4062400460243225},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3819512128829956},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3683331608772278},{"id":"https://openalex.org/keywords/semantic-web-stack","display_name":"Semantic Web Stack","score":0.3593108057975769},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.23721840977668762},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1293632984161377},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12264654040336609}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8525313138961792},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7420385479927063},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6242226362228394},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5901627540588379},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5639225840568542},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5138599872589111},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4948531985282898},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.4428153336048126},{"id":"https://openalex.org/C70388272","wikidata":"https://www.wikidata.org/wiki/Q5968558","display_name":"IBM","level":2,"score":0.4422690272331238},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.4380662441253662},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.42609232664108276},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4062400460243225},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3819512128829956},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3683331608772278},{"id":"https://openalex.org/C167379230","wikidata":"https://www.wikidata.org/wiki/Q1026884","display_name":"Semantic Web Stack","level":3,"score":0.3593108057975769},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.23721840977668762},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1293632984161377},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12264654040336609},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3233547.3233650","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3233547.3233650","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6399999856948853,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2366430559","https://openalex.org/W2349698472","https://openalex.org/W1985801232","https://openalex.org/W2005492920","https://openalex.org/W2171552258","https://openalex.org/W2023110884","https://openalex.org/W2355823470","https://openalex.org/W1710908466","https://openalex.org/W1975429881","https://openalex.org/W2359143405"],"abstract_inverted_index":{"We":[0,38,68,88,109],"have":[1,81],"developed":[2],"a":[3],"cloud-based":[4,138],"(AWS":[5],"and":[6,18,35,58,61,80,124],"IBM":[7],"SoftLayer)":[8],"knowledge":[9,21,139],"environment":[10,140],"for":[11,120,135],"scalable":[12],"semantic":[13,40],"mining":[14,45,50],"of":[15,42,73,114],"scientific":[16],"literature":[17],"PTM":[19,59],"integrative":[20],"discovery":[22],"in":[23,76,84],"precision":[24],"medicine,":[25],"building":[26],"upon":[27],"our":[28,137],"novel":[29],"natural":[30],"language":[31],"processing":[32],"(NLP)":[33],"technologies":[34],"bioinformatics":[36],"infrastructure.":[37],"provided":[39],"integration":[41],"full-scale":[43],"PubMed":[44],"results":[46],"from":[47,56,64],"disparate":[48],"text":[49],"tools,":[51],"along":[52],"with":[53,90,127],"kinase-substrate":[54],"data":[55],"iPTMnet,":[57],"proteoforms":[60],"their":[62],"relations":[63],"Protein":[65],"Ontology":[66],"(PRO).":[67],"shared":[69],"the":[70,111],"digital":[71],"objects":[72],"those":[74],"applications":[75],"multiple":[77,91],"interoperable":[78],"formats":[79],"registered":[82],"them":[83],"bioCADDIE":[85],"using":[86,94],"CEDAR.":[87],"experimented":[89],"system":[92],"setups":[93],"operating":[95],"system,":[96],"programming":[97],"language,":[98],"web":[99,131],"server,":[100],"or":[101],"database":[102],"server":[103],"that":[104],"best":[105],"fits":[106],"each":[107],"application.":[108],"evaluated":[110],"cost":[112],"effectiveness":[113],"cloud":[115],"computing":[116],"by":[117],"only":[118],"paying":[119],"what":[121],"we":[122],"use":[123],"readily":[125],"experimenting":[126],"additional":[128],"services.":[129],"A":[130],"portal":[132],"is":[133],"available":[134],"accessing":[136],"at":[141],"https://proteininformationresource.org/cloud/.":[142]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
