{"id":"https://openalex.org/W2888120835","doi":"https://doi.org/10.1145/3233547.3233596","title":"Convolutional Neural Networks for Predicting Molecular Binding Affinity to HIV-1 Proteins","display_name":"Convolutional Neural Networks for Predicting Molecular Binding Affinity to HIV-1 Proteins","publication_year":2018,"publication_date":"2018-08-15","ids":{"openalex":"https://openalex.org/W2888120835","doi":"https://doi.org/10.1145/3233547.3233596","mag":"2888120835"},"language":"en","primary_location":{"id":"doi:10.1145/3233547.3233596","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3233547.3233596","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040859657","display_name":"Paul Morris","orcid":"https://orcid.org/0000-0003-0139-5262"},"institutions":[{"id":"https://openalex.org/I63772739","display_name":"Florida Atlantic University","ror":"https://ror.org/05p8w6387","country_code":"US","type":"education","lineage":["https://openalex.org/I63772739"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Morris","raw_affiliation_strings":["Florida Atlantic University, Boca Raton, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Florida Atlantic University, Boca Raton, FL, USA","institution_ids":["https://openalex.org/I63772739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031455787","display_name":"Yahchayil DaSilva","orcid":null},"institutions":[{"id":"https://openalex.org/I63772739","display_name":"Florida Atlantic University","ror":"https://ror.org/05p8w6387","country_code":"US","type":"education","lineage":["https://openalex.org/I63772739"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yahchayil DaSilva","raw_affiliation_strings":["Florida Atlantic University, Boca Raton, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Florida Atlantic University, Boca Raton, FL, USA","institution_ids":["https://openalex.org/I63772739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032942615","display_name":"Evan Clark","orcid":"https://orcid.org/0000-0002-4951-2627"},"institutions":[{"id":"https://openalex.org/I63772739","display_name":"Florida Atlantic University","ror":"https://ror.org/05p8w6387","country_code":"US","type":"education","lineage":["https://openalex.org/I63772739"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Evan Clark","raw_affiliation_strings":["Florida Atlantic University, Boca Raton, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Florida Atlantic University, Boca Raton, FL, USA","institution_ids":["https://openalex.org/I63772739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003569746","display_name":"William Edward Hahn","orcid":null},"institutions":[{"id":"https://openalex.org/I63772739","display_name":"Florida Atlantic University","ror":"https://ror.org/05p8w6387","country_code":"US","type":"education","lineage":["https://openalex.org/I63772739"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Edward Hahn","raw_affiliation_strings":["Florida Atlantic University, Boca Raton, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Florida Atlantic University, Boca Raton, FL, USA","institution_ids":["https://openalex.org/I63772739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055719182","display_name":"Elan Barenholtz","orcid":null},"institutions":[{"id":"https://openalex.org/I63772739","display_name":"Florida Atlantic University","ror":"https://ror.org/05p8w6387","country_code":"US","type":"education","lineage":["https://openalex.org/I63772739"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elan Barenholtz","raw_affiliation_strings":["Florida Atlantic University, Boca Raton, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Florida Atlantic University, Boca Raton, FL, USA","institution_ids":["https://openalex.org/I63772739"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.858,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.76720192,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"220","last_page":"225"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6505244970321655},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.6368420124053955},{"id":"https://openalex.org/keywords/hiv-1-protease","display_name":"HIV-1 protease","score":0.6095931529998779},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.580277681350708},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5621696710586548},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.5388448238372803},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5338956117630005},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5095430016517639},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4677313268184662},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.46619337797164917},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.4414166808128357},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4274163246154785},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2422182261943817},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2409467101097107},{"id":"https://openalex.org/keywords/protease","display_name":"Protease","score":0.2213934361934662},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1945118010044098},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11099648475646973}],"concepts":[{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6505244970321655},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.6368420124053955},{"id":"https://openalex.org/C2777583353","wikidata":"https://www.wikidata.org/wiki/Q410261","display_name":"HIV-1 protease","level":4,"score":0.6095931529998779},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.580277681350708},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5621696710586548},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.5388448238372803},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5338956117630005},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5095430016517639},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4677313268184662},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.46619337797164917},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.4414166808128357},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4274163246154785},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2422182261943817},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2409467101097107},{"id":"https://openalex.org/C2776714187","wikidata":"https://www.wikidata.org/wiki/Q212410","display_name":"Protease","level":3,"score":0.2213934361934662},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1945118010044098},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11099648475646973},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3233547.3233596","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3233547.3233596","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7699999809265137}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1498436455","https://openalex.org/W1686810756","https://openalex.org/W1799366690","https://openalex.org/W1903029394","https://openalex.org/W1975147762","https://openalex.org/W1977467384","https://openalex.org/W1981491253","https://openalex.org/W1991492628","https://openalex.org/W2024410915","https://openalex.org/W2031441006","https://openalex.org/W2039884989","https://openalex.org/W2064675550","https://openalex.org/W2098605123","https://openalex.org/W2099782613","https://openalex.org/W2101234009","https://openalex.org/W2102698854","https://openalex.org/W2104270610","https://openalex.org/W2105517114","https://openalex.org/W2163605009","https://openalex.org/W2169393322","https://openalex.org/W2177317049","https://openalex.org/W2204695023","https://openalex.org/W2290847742","https://openalex.org/W2433743436","https://openalex.org/W2470723632","https://openalex.org/W2611386757","https://openalex.org/W2751808960","https://openalex.org/W2763945890","https://openalex.org/W2963457143","https://openalex.org/W2964113829","https://openalex.org/W2997591727","https://openalex.org/W3098468971","https://openalex.org/W3100157108","https://openalex.org/W4212774754","https://openalex.org/W4235712548","https://openalex.org/W4294293047"],"related_works":["https://openalex.org/W4293226380","https://openalex.org/W4312103688","https://openalex.org/W2575434942","https://openalex.org/W2480711475","https://openalex.org/W4321487865","https://openalex.org/W2047838177","https://openalex.org/W4313906399","https://openalex.org/W4308805210","https://openalex.org/W4312202637","https://openalex.org/W2060120163"],"abstract_inverted_index":{"Computational":[0],"techniques":[1,29],"for":[2,17,65,131,140],"binding-affinity":[3],"prediction":[4],"and":[5,90,94,108],"molecular":[6],"docking":[7],"have":[8,30],"long":[9],"been":[10],"considered":[11],"in":[12],"terms":[13],"of":[14,23,37,48,82,102,137],"their":[15,58],"utility":[16],"drug":[18],"discovery.":[19],"With":[20],"the":[21,35,46,113],"advent":[22],"deep":[24],"learning,":[25],"new":[26],"supervised":[27],"learning":[28,125],"emerged":[31],"which":[32,84,121],"can":[33],"utilize":[34],"wealth":[36],"experimental":[38],"binding":[39,66,141],"data":[40],"already":[41],"available.":[42],"Here":[43],"we":[44],"demonstrate":[45],"ability":[47],"a":[49,80,99,117,134],"fully":[50],"convolutional":[51],"neural":[52],"network":[53,72],"to":[54,68,78,88,142],"classify":[55],"molecules":[56,83,139],"from":[57,98],"Simplified":[59],"Molecular-Input":[60],"Line-Entry":[61],"System":[62],"(SMILES)":[63],"strings":[64],"affinity":[67],"HIV":[69,143],"proteins.":[70],"The":[71],"is":[73,129],"evaluated":[74],"on":[75,112],"two":[76],"tasks":[77,115],"distinguish":[79],"set":[81,136],"are":[85],"experimentally":[86],"verified":[87],"bind":[89],"inhibit":[91],"HIV-1":[92,95],"Protease":[93],"Reverse":[96],"Transcriptase":[97],"random":[100],"sample":[101],"drug-like":[103,138],"molecules.":[104],"We":[105],"report":[106],"98%":[107],"93%":[109],"classification":[110],"accuracy":[111],"respective":[114],"using":[116],"computationally":[118],"efficient":[119],"model":[120,128],"outperforms":[122],"traditional":[123],"machine":[124],"baselines.":[126],"Our":[127],"suitable":[130],"virtually":[132],"screening":[133],"large":[135],"or":[144],"other":[145],"protein":[146],"targets.":[147]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
