{"id":"https://openalex.org/W2888327293","doi":"https://doi.org/10.1145/3233547.3233560","title":"Phylogenetic Consensus for Exact Median Trees","display_name":"Phylogenetic Consensus for Exact Median Trees","publication_year":2018,"publication_date":"2018-08-15","ids":{"openalex":"https://openalex.org/W2888327293","doi":"https://doi.org/10.1145/3233547.3233560","mag":"2888327293"},"language":"en","primary_location":{"id":"doi:10.1145/3233547.3233560","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3233547.3233560","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3233547.3233560","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3233547.3233560","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058604513","display_name":"Pawe\u0142 Tabaszewski","orcid":null},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Pawel Tabaszewski","raw_affiliation_strings":["University of Warsaw, Warsaw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088359373","display_name":"Pawe\u0142 G\u00f3recki","orcid":"https://orcid.org/0000-0002-2045-5892"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Pawel G\u00f3recki","raw_affiliation_strings":["University of Warsaw, Warsaw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041404337","display_name":"Oliver Eulenstein","orcid":"https://orcid.org/0000-0002-5291-3798"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oliver Eulenstein","raw_affiliation_strings":["Iowa State University, Ames, IA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9393,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.76972917,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"366","last_page":"375"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14049","display_name":"Plant and Fungal Species Descriptions","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8233554363250732},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.7394681572914124},{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.7157636284828186},{"id":"https://openalex.org/keywords/tree-rearrangement","display_name":"Tree rearrangement","score":0.6469914317131042},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.592010498046875},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.5767542719841003},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5541865825653076},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.5056843757629395},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.39266929030418396},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3831295371055603},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.36478111147880554},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33529263734817505},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.1803635060787201},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16790825128555298}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8233554363250732},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.7394681572914124},{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.7157636284828186},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.6469914317131042},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.592010498046875},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.5767542719841003},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5541865825653076},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.5056843757629395},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.39266929030418396},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3831295371055603},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.36478111147880554},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33529263734817505},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.1803635060787201},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16790825128555298},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3233547.3233560","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3233547.3233560","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3233547.3233560","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3233547.3233560","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3233547.3233560","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3233547.3233560","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.5799999833106995}],"awards":[{"id":"https://openalex.org/G1825040754","display_name":"AF:Small:Algorithmic Foundations for Evolutionary Tree Comparison and Assembly","funder_award_id":"1617626","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6111353625","display_name":null,"funder_award_id":"#2015/19/B/ST6/00726","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320322511","display_name":"Narodowe Centrum Nauki","ror":"https://ror.org/03ha2q922"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2888327293.pdf","grobid_xml":"https://content.openalex.org/works/W2888327293.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W652386265","https://openalex.org/W1533994827","https://openalex.org/W1544293646","https://openalex.org/W1589227310","https://openalex.org/W1843274134","https://openalex.org/W1985174792","https://openalex.org/W1996437477","https://openalex.org/W2007802079","https://openalex.org/W2012522296","https://openalex.org/W2019591778","https://openalex.org/W2032299129","https://openalex.org/W2053851102","https://openalex.org/W2066393903","https://openalex.org/W2067547496","https://openalex.org/W2086773790","https://openalex.org/W2096565388","https://openalex.org/W2109596230","https://openalex.org/W2109991075","https://openalex.org/W2118127427","https://openalex.org/W2122443626","https://openalex.org/W2145608399","https://openalex.org/W2146683389","https://openalex.org/W2149049580","https://openalex.org/W2159892619","https://openalex.org/W2160971996","https://openalex.org/W2574269559","https://openalex.org/W2577202510","https://openalex.org/W2746192552","https://openalex.org/W4229487902","https://openalex.org/W4231886136"],"related_works":["https://openalex.org/W85430217","https://openalex.org/W2607237371","https://openalex.org/W2800044728","https://openalex.org/W3088015816","https://openalex.org/W2252576209","https://openalex.org/W2110570734","https://openalex.org/W3106839334","https://openalex.org/W4287661213","https://openalex.org/W4205904230","https://openalex.org/W2791652447"],"abstract_inverted_index":{"Solving":[0],"median":[1,60],"tree":[2,61],"problems":[3,20,62],"is":[4,147],"a":[5,13,56,103,151],"classic":[6],"approach":[7],"for":[8,63],"inferring":[9],"species":[10,77,120],"trees":[11,78,121,128],"from":[12,122],"collection":[14],"of":[15,59,80,92,107,117,126,142,154],"discordant":[16],"gene":[17],"trees.":[18],"Such":[19],"are":[21],"typically":[22],"NP-hard":[23],"and":[24,39,85,158],"dealt":[25],"with":[26],"by":[27],"local":[28],"search":[29],"heuristics.":[30],"Unfortunately,":[31],"such":[32,83],"heuristics":[33],"generally":[34],"lack":[35],"any":[36],"provable":[37],"correctness":[38],"precision.":[40],"Algorithmic":[41],"advances":[42],"addressing":[43],"this":[44],"uncertainty,":[45],"have":[46],"led":[47],"to":[48,54,71],"exact":[49],"dynamic":[50,109],"programming":[51,110,145],"formulations":[52,69,111],"suitable":[53],"solve":[55],"well-studied":[57],"group":[58],"smaller":[64],"phylogenetic":[65,86,162],"analyzes.":[66],"However,":[67],"these":[68],"allow":[70],"compute":[72,113],"only":[73],"very":[74],"few":[75],"optimal":[76,94,119],"out":[79],"possibly":[81],"many":[82],"trees,":[84],"studies":[87],"often":[88],"require":[89],"the":[90,108,114,143,155],"analysis":[91],"all":[93,118],"solutions":[95],"through":[96],"their":[97],"consensus":[98,127],"tree.":[99],"Here,":[100],"we":[101,136],"describe":[102],"significant":[104],"algorithmic":[105],"modification":[106],"that":[112,138],"cluster":[115],"counts":[116],"which":[123],"various":[124],"types":[125],"can":[129,159],"be":[130],"efficiently":[131],"computed.":[132],"Through":[133],"experimental":[134],"studies,":[135],"demonstrate":[137],"our":[139],"parallel":[140],"implementation":[141,153],"modified":[144],"formulation":[146],"more":[148],"efficient":[149],"than":[150],"previous":[152],"original":[156],"formulation,":[157],"greatly":[160],"benefit":[161],"analyses.":[163]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}