{"id":"https://openalex.org/W2890634992","doi":"https://doi.org/10.1145/3232059.3232068","title":"Application of Graph Database in the Storage of Heterogeneous Omics Data for the Treatment in Bioinformatics","display_name":"Application of Graph Database in the Storage of Heterogeneous Omics Data for the Treatment in Bioinformatics","publication_year":2018,"publication_date":"2018-05-16","ids":{"openalex":"https://openalex.org/W2890634992","doi":"https://doi.org/10.1145/3232059.3232068","mag":"2890634992"},"language":"en","primary_location":{"id":"doi:10.1145/3232059.3232068","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3232059.3232068","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 10th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041530935","display_name":"Diogo Mattioli","orcid":null},"institutions":[{"id":"https://openalex.org/I4210142765","display_name":"Instituto de Pesquisas Tecnol\u00f3gicas","ror":"https://ror.org/041mvdf76","country_code":"BR","type":"facility","lineage":["https://openalex.org/I4210142765"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Diogo Mattioli","raw_affiliation_strings":["Instituto de Pesquisas Tecnol\u00f3gicas do Estado de S\u00e3o Paulo, S\u00e3o Paulo, SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto de Pesquisas Tecnol\u00f3gicas do Estado de S\u00e3o Paulo, S\u00e3o Paulo, SP, Brazil","institution_ids":["https://openalex.org/I4210142765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083830029","display_name":"Marco Dimas Gubitoso","orcid":"https://orcid.org/0000-0001-8334-9651"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Marco D. Gubitoso","raw_affiliation_strings":["Instituto de Matem\u00e1tica e Estat\u00edstica da, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto de Matem\u00e1tica e Estat\u00edstica da, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, SP, Brazil","institution_ids":["https://openalex.org/I17974374"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5041530935"],"corresponding_institution_ids":["https://openalex.org/I4210142765"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08328779,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"51","last_page":"56"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9794999957084656,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9628000259399414,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7201974391937256},{"id":"https://openalex.org/keywords/graph-database","display_name":"Graph database","score":0.5908587574958801},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.544492244720459},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5406486988067627},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5062002539634705},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43410587310791016},{"id":"https://openalex.org/keywords/vertex","display_name":"Vertex (graph theory)","score":0.4242265522480011},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36983659863471985},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.29604393243789673}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7201974391937256},{"id":"https://openalex.org/C176225458","wikidata":"https://www.wikidata.org/wiki/Q595971","display_name":"Graph database","level":3,"score":0.5908587574958801},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.544492244720459},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5406486988067627},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5062002539634705},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43410587310791016},{"id":"https://openalex.org/C80899671","wikidata":"https://www.wikidata.org/wiki/Q1304193","display_name":"Vertex (graph theory)","level":3,"score":0.4242265522480011},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36983659863471985},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.29604393243789673}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3232059.3232068","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3232059.3232068","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2018 10th International Conference on Bioinformatics and Biomedical Technology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1338556425","display_name":null,"funder_award_id":"#2015/01587-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1538442356","https://openalex.org/W1981215030","https://openalex.org/W2020391739","https://openalex.org/W2050516909","https://openalex.org/W2067305633","https://openalex.org/W2096173332","https://openalex.org/W2096525273","https://openalex.org/W2161077919","https://openalex.org/W2170069186","https://openalex.org/W2323427343","https://openalex.org/W2329659234","https://openalex.org/W2345754597","https://openalex.org/W2346109156","https://openalex.org/W2412681020","https://openalex.org/W2492029291","https://openalex.org/W4237629094","https://openalex.org/W4285719527","https://openalex.org/W4386972526"],"related_works":["https://openalex.org/W2003932708","https://openalex.org/W1967424056","https://openalex.org/W2284877871","https://openalex.org/W2138102289","https://openalex.org/W978295669","https://openalex.org/W4281562483","https://openalex.org/W2800353001","https://openalex.org/W4391060474","https://openalex.org/W3115442681","https://openalex.org/W2391000461"],"abstract_inverted_index":{"Cancer":[0],"is":[1,29,128,189],"driven":[2],"by":[3,57,69,95],"changes":[4],"in":[5,80,109,172,193,205],"the":[6,13,22,30,43,46,51,64,81,107,110,117,129,147,163,169,173,181,194,206],"patterns":[7],"of":[8,15,21,32,45,54,62,66,78,85,120,125,131,138,149,158,168,175,197,208],"gene":[9],"expressions":[10],"due":[11],"to":[12,50],"accumulation":[14],"mutations":[16],"or":[17],"epigenetic":[18],"changes.":[19],"One":[20],"approaches":[23],"used":[24,171],"for":[25,134,143,162],"detecting":[26],"new":[27,176],"oncogenes":[28],"extraction":[31],"subgraphs":[33,55],"with":[34],"four":[35,139],"vertices":[36],"from":[37],"a":[38,89,101,150,156,190,202],"protein-protein":[39],"interaction":[40],"network":[41],"containing":[42],"transcriptions":[44],"genes":[47],"expressions.":[48],"Due":[49],"large":[52],"amount":[53,112],"formed":[56],"this":[58,67,93,121,126],"dense":[59],"net-":[60],"work":[61,127,154],"interaction,":[63],"processing":[65,195],"information":[68,94,111],"using":[70,96,201],"regular":[71],"files":[72],"and":[73,83,98,106,136,160,166,179],"relational":[74],"databases":[75],"consumes":[76],"dozens":[77],"hours":[79],"search":[82,135],"classification":[84],"these":[86,198],"subgraphs;":[87],"whereas":[88],"graph":[90,151,203],"database":[91,204],"stores":[92],"nodes":[97],"relationships,":[99],"has":[100],"shorter":[102],"data":[103,164,199],"query":[104,118],"time,":[105],"increase":[108],"does":[113],"not":[114],"impact":[115],"on":[116],"time":[119],"information.":[122],"The":[123,153,184],"purpose":[124],"improvement":[130],"available":[132],"methods":[133,170],"detection":[137,174,207],"vertex":[140],"subgraphs,":[141],"aiming":[142],"higher":[144],"performance":[145,196],"through":[146],"application":[148],"database.":[152],"proposes":[155],"strategy":[157],"specification":[159],"implementation":[161],"import":[165],"reproduction":[167],"oncogenes,":[177],"exposing":[178],"comparing":[180],"obtained":[182],"results.":[183],"results":[185],"showed":[186],"that":[187],"there":[188],"significant":[191],"gain":[192],"when":[200],"motifs.":[209]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
