{"id":"https://openalex.org/W2808895435","doi":"https://doi.org/10.1145/3219819.3219854","title":"SDREGION","display_name":"SDREGION","publication_year":2018,"publication_date":"2018-07-19","ids":{"openalex":"https://openalex.org/W2808895435","doi":"https://doi.org/10.1145/3219819.3219854","mag":"2808895435"},"language":"en","primary_location":{"id":"doi:10.1145/3219819.3219854","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3219819.3219854","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3219819.3219854","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery &amp; Data Mining","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3219819.3219854","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023919747","display_name":"Serene Wong","orcid":"https://orcid.org/0000-0001-8294-4846"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Serene W.H. Wong","raw_affiliation_strings":["University Health Network, Toronto, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University Health Network, Toronto, Canada","institution_ids":["https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085732287","display_name":"Chiara Pastrello","orcid":"https://orcid.org/0000-0002-1934-7472"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chiara Pastrello","raw_affiliation_strings":["University Health Network, Toronto, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University Health Network, Toronto, Canada","institution_ids":["https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038607647","display_name":"Max Kotlyar","orcid":"https://orcid.org/0000-0002-1111-8667"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Max Kotlyar","raw_affiliation_strings":["University Health Network, Toronto, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University Health Network, Toronto, Canada","institution_ids":["https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035605036","display_name":"Christos Faloutsos","orcid":"https://orcid.org/0000-0003-2996-9790"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christos Faloutsos","raw_affiliation_strings":["Carnegie Mellon University, Pittsburgh, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055656807","display_name":"Igor Juri\u0161ica","orcid":"https://orcid.org/0000-0002-2507-946X"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Igor Jurisica","raw_affiliation_strings":["University of Toronto &amp;University Health Network, Toronto, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Toronto &amp;University Health Network, Toronto, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.8351,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.72372807,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"867","last_page":"875"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6430572271347046},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6332472562789917},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5213279128074646},{"id":"https://openalex.org/keywords/monotonic-function","display_name":"Monotonic function","score":0.497221976518631},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.44428056478500366},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.41944241523742676},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3645711839199066},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19331195950508118},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13139420747756958},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08402436971664429}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6430572271347046},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6332472562789917},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5213279128074646},{"id":"https://openalex.org/C72169020","wikidata":"https://www.wikidata.org/wiki/Q194404","display_name":"Monotonic function","level":2,"score":0.497221976518631},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.44428056478500366},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.41944241523742676},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3645711839199066},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19331195950508118},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13139420747756958},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08402436971664429},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3219819.3219854","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3219819.3219854","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3219819.3219854","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery &amp; Data Mining","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3219819.3219854","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3219819.3219854","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3219819.3219854","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery &amp; Data Mining","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7599999904632568}],"awards":[{"id":"https://openalex.org/G1763277275","display_name":"TWC: Medium: Collaborative: Know Thy Enemy: Data Mining Meets Networks for Understanding Web-Based Malware Dissemination","funder_award_id":"1314632","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3116621514","display_name":"III: Medium: Collaborative Research: Collective Opinion Fraud Detection: Identifying and Integrating Cues from Language, Behavior, and Networks","funder_award_id":"1408924","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3412669958","display_name":null,"funder_award_id":"CNS-1314632, IIS-1408924","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3968667353","display_name":null,"funder_award_id":"IIS-1408924","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4866325391","display_name":null,"funder_award_id":"104105","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G570434710","display_name":null,"funder_award_id":"PDF-487917-2016","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G7605945254","display_name":null,"funder_award_id":"203373, 225404","funder_id":"https://openalex.org/F4320321481","funder_display_name":"Canada Excellence Research Chairs, Government of Canada"},{"id":"https://openalex.org/G900395923","display_name":null,"funder_award_id":"CNS-1314632","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321481","display_name":"Canada Excellence Research Chairs, Government of Canada","ror":"https://ror.org/02tvrwm90"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2808895435.pdf","grobid_xml":"https://content.openalex.org/works/W2808895435.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W115026875","https://openalex.org/W1595138162","https://openalex.org/W1964669181","https://openalex.org/W1977764675","https://openalex.org/W2020541351","https://openalex.org/W2023033116","https://openalex.org/W2033228235","https://openalex.org/W2034232365","https://openalex.org/W2035406273","https://openalex.org/W2071333117","https://openalex.org/W2079065101","https://openalex.org/W2085710075","https://openalex.org/W2103017472","https://openalex.org/W2142351815","https://openalex.org/W2155354546","https://openalex.org/W2155640700","https://openalex.org/W2167566248","https://openalex.org/W2169622100","https://openalex.org/W2259724869","https://openalex.org/W2287162359","https://openalex.org/W2510844191","https://openalex.org/W2513234781","https://openalex.org/W2558585189","https://openalex.org/W2586047314","https://openalex.org/W2740505012"],"related_works":["https://openalex.org/W2077314575","https://openalex.org/W4315701745","https://openalex.org/W1990290471","https://openalex.org/W4380682190","https://openalex.org/W2005710836","https://openalex.org/W2102386043","https://openalex.org/W2945307361","https://openalex.org/W2116636209","https://openalex.org/W2053698688","https://openalex.org/W2346559293"],"abstract_inverted_index":{"Given":[0,17],"a":[1,18,23,111,146,218,240],"large,":[2],"dynamic":[3,19,242],"graph,":[4],"how":[5],"can":[6,97],"we":[7,109,157,175],"trace":[8],"the":[9,32,36,45,49,56,60,67,71,83,136,165,168,228,235],"activities":[10],"of":[11,13,35,48,59,167,170,221,230,237],"groups":[12],"vertices":[14,238],"over":[15,125],"time?":[16],"biological":[20,211],"graph":[21],"modeling":[22,166],"given":[24,241],"disease":[25,68,88],"progression,":[26,89],"which":[27],"genes":[28,52],"interact":[29,53],"closely":[30],"at":[31,55],"early":[33,57],"stage":[34,47,58],"disease,":[37,61],"and":[38,62,90,161,232],"their":[39,63],"interactions":[40,64],"are":[41,101],"being":[42],"disrupted":[43],"in":[44,122,164,204,239],"latter":[46],"disease?":[50],"Which":[51],"sparsely":[54],"increase":[65,121],"as":[66,78,129],"progresses?":[69],"Knowing":[70],"answers":[72],"to":[73,82,87,105,128],"these":[74,95],"questions":[75],"is":[76,145,215,227,234],"important":[77],"they":[79],"give":[80],"insights":[81],"underlying":[84],"molecular":[85],"mechanism":[86],"potential":[91],"treatments":[92],"that":[93,115,118,177,181,184,190,207],"target":[94],"mechanisms":[96,183,203],"be":[98],"developed.":[99],"There":[100],"three":[102],"main":[103],"contributions":[104],"this":[106,155],"paper.":[107],"First,":[108],"designed":[110],"novel":[112,202],"algorithm,":[113,148],"SDREGION,":[114],"identifies":[116],"subgraphs":[117],"decrease":[119],"or":[120,131],"density":[123],"monotonically":[124],"time,":[126],"referred":[127],"d-regions":[130],"i-regions,":[132],"respectively.":[133],"We":[134],"introduced":[135],"objective":[137],"function,":[138],"-density,":[139],"for":[140],"identifying":[141],"d-(i-)regions.":[142],"Second,":[143],"SDREGION":[144,178,214],"generic":[147],"applicable":[149],"across":[150],"several":[151],"real":[152],"datasets.":[153],"In":[154,173],"manuscript,":[156],"showed":[158],"its":[159],"effectiveness,":[160],"made":[162],"observations":[163],"progression":[169,206],"lung":[171],"cancer.":[172],"particular,":[174],"observed":[176],"identified":[179,192],"d-(i-)regions":[180],"capture":[182],"align":[185],"with":[186,217],"literature.":[187],"Importantly,":[188],"findings":[189],"were":[191,194],"but":[193],"not":[195],"retrospectively":[196],"validated":[197],"by":[198],"literature":[199],"may":[200],"provide":[201],"tumor":[205],"will":[208],"guide":[209],"future":[210],"experiments.":[212],"Third,":[213],"scalable":[216],"time":[219],"complexity":[220],"O(mlogn":[222],"+":[223],"nlogn)":[224],"where":[225],"m":[226],"number":[229,236],"edges,":[231],"n":[233],"graph.":[243]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2018-06-29T00:00:00"}
