{"id":"https://openalex.org/W2835898489","doi":"https://doi.org/10.1145/3219104.3229266","title":"Applying iRODS to the Brain Image Library","display_name":"Applying iRODS to the Brain Image Library","publication_year":2018,"publication_date":"2018-07-12","ids":{"openalex":"https://openalex.org/W2835898489","doi":"https://doi.org/10.1145/3219104.3229266","mag":"2835898489"},"language":"en","primary_location":{"id":"doi:10.1145/3219104.3229266","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3219104.3229266","pdf_url":null,"source":{"id":"https://openalex.org/S4306524298","display_name":"Proceedings of the Practice and Experience on Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Practice and Experience on Advanced Research Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089927754","display_name":"Sean Deitrich","orcid":null},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean Deitrich","raw_affiliation_strings":["Pittsburgh Supercomputing Center, Pittsburgh, Pennsylvania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center, Pittsburgh, Pennsylvania","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049392901","display_name":"Jacob Czech","orcid":null},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacob Czech","raw_affiliation_strings":["Pittsburgh Supercomputing Center, Pittsburgh, Pennsylvania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center, Pittsburgh, Pennsylvania","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091840898","display_name":"Alexander J. Ropelewski","orcid":"https://orcid.org/0000-0001-6874-4477"},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander Ropelewski","raw_affiliation_strings":["Pittsburgh Supercomputing Center, Pittsburgh, Pennsylvania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center, Pittsburgh, Pennsylvania","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112529387","display_name":"Arthur W. Wetzel","orcid":null},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arthur W. Wetzel","raw_affiliation_strings":["Pittsburgh Supercomputing Center, Pittsburgh, Pennsylvania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center, Pittsburgh, Pennsylvania","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060799219","display_name":"Greg Hood","orcid":"https://orcid.org/0000-0001-9871-7154"},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Greg Hood","raw_affiliation_strings":["Pittsburgh Supercomputing Center, Pittsburgh, Pennsylvania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center, Pittsburgh, Pennsylvania","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031743404","display_name":"Derek Simmel","orcid":null},"institutions":[{"id":"https://openalex.org/I35765314","display_name":"Pittsburgh Supercomputing Center","ror":"https://ror.org/04tac1482","country_code":"US","type":"facility","lineage":["https://openalex.org/I35765314"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Derek Simmel","raw_affiliation_strings":["Pittsburgh Supercomputing Center, Pittsburgh, Pennsylvania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pittsburgh Supercomputing Center, Pittsburgh, Pennsylvania","institution_ids":["https://openalex.org/I35765314"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028325980","display_name":"Marcel P. Bruchez","orcid":"https://orcid.org/0000-0002-7370-4848"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcel Bruchez","raw_affiliation_strings":["Center for Biologic Imaging, Carnegie Mellon University, Pittsburgh, Pennsylvania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biologic Imaging, Carnegie Mellon University, Pittsburgh, Pennsylvania","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088924932","display_name":"Simon C. Watkins","orcid":"https://orcid.org/0000-0003-4092-1552"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Simon C. Watkins","raw_affiliation_strings":["Center for Biologic Imaging, University of Pittsburgh, Pittsburgh, Pennsylvania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biologic Imaging, University of Pittsburgh, Pittsburgh, Pennsylvania","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056643989","display_name":"Alan M. Watson","orcid":"https://orcid.org/0000-0003-0632-8296"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan M. Watson","raw_affiliation_strings":["Center for Biologic Imaging, University of Pittsburgh, Pittsburgh, Pennsylvania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biologic Imaging, University of Pittsburgh, Pittsburgh, Pennsylvania","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5141,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.78937171,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10977","display_name":"Optical Imaging and Spectroscopy Techniques","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6806027293205261},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.550732433795929},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.509212851524353},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46940600872039795},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.40960657596588135},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.35008561611175537},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08044058084487915}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6806027293205261},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.550732433795929},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.509212851524353},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46940600872039795},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.40960657596588135},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.35008561611175537},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08044058084487915},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3219104.3229266","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3219104.3229266","pdf_url":null,"source":{"id":"https://openalex.org/S4306524298","display_name":"Proceedings of the Practice and Experience on Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Practice and Experience on Advanced Research Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5099999904632568,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2043701535","https://openalex.org/W2729512695","https://openalex.org/W4233262609"],"related_works":["https://openalex.org/W2058170566","https://openalex.org/W2772917594","https://openalex.org/W2755342338","https://openalex.org/W2166024367","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2951359407","https://openalex.org/W2079911747","https://openalex.org/W1969923398","https://openalex.org/W2775347418"],"abstract_inverted_index":{"Recent":[0],"advancements":[1],"in":[2],"optical":[3],"microscopy":[4],"and":[5,13,23,59,65],"specimen":[6],"preparation":[7],"have":[8,19],"greatly":[9],"improved":[10],"the":[11,47],"specificity":[12],"sensitivity":[14],"of":[15,34,37],"observation.":[16],"Imaging":[17],"instruments":[18],"become":[20],"readily":[21],"available":[22],"produce":[24],"data":[25,56],"at":[26],"GB/s":[27],"rates.":[28],"These":[29],"capabilities":[30],"now":[31],"allow":[32],"capture":[33],"large":[35,64],"numbers":[36],"whole-brain":[38],"volumetric":[39],"datasets,":[40],"enabling":[41],"morphological":[42],"study":[43],"including":[44],"connectivity":[45],"within":[46],"brain.":[48],"Brain":[49],"image":[50],"datasets":[51],"pose":[52],"a":[53],"problem":[54],"for":[55],"storage,":[57],"access,":[58],"analysis":[60],"due":[61],"to":[62],"their":[63],"complex":[66],"structure.":[67]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
