{"id":"https://openalex.org/W2875719337","doi":"https://doi.org/10.1145/3219104.3219163","title":"Analyzing the Human Connectome Project Datasets using GPUs","display_name":"Analyzing the Human Connectome Project Datasets using GPUs","publication_year":2018,"publication_date":"2018-07-12","ids":{"openalex":"https://openalex.org/W2875719337","doi":"https://doi.org/10.1145/3219104.3219163","mag":"2875719337"},"language":"en","primary_location":{"id":"doi:10.1145/3219104.3219163","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3219104.3219163","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3219104.3219163","source":{"id":"https://openalex.org/S4306524298","display_name":"Proceedings of the Practice and Experience on Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Practice and Experience on Advanced Research Computing","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3219104.3219163","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052611551","display_name":"John\u2010Paul Robinson","orcid":"https://orcid.org/0009-0007-2599-4063"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"John-Paul Robinson","raw_affiliation_strings":["Research Computing, University of Alabama at Birmingham, Birmingham, Alabama"],"affiliations":[{"raw_affiliation_string":"Research Computing, University of Alabama at Birmingham, Birmingham, Alabama","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000081835","display_name":"Thomas Anthony","orcid":"https://orcid.org/0000-0002-4443-5466"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas Anthony","raw_affiliation_strings":["Research Computing, University of Alabama at Birmingham, Birmingham, Alabama"],"affiliations":[{"raw_affiliation_string":"Research Computing, University of Alabama at Birmingham, Birmingham, Alabama","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021689450","display_name":"Ravi P. N. Tripathi","orcid":"https://orcid.org/0000-0002-4117-4002"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ravi Tripathi","raw_affiliation_strings":["Research Computing, University of Alabama at Birmingham, Birmingham, Alabama"],"affiliations":[{"raw_affiliation_string":"Research Computing, University of Alabama at Birmingham, Birmingham, Alabama","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112723842","display_name":"Sara A. Sims","orcid":null},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sara A. Sims","raw_affiliation_strings":["Psychology, University of Alabama at Birmingham Birmingham, Alabama"],"affiliations":[{"raw_affiliation_string":"Psychology, University of Alabama at Birmingham Birmingham, Alabama","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036461615","display_name":"Kristina Visscher","orcid":"https://orcid.org/0000-0003-0737-4024"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kristina M. Visscher","raw_affiliation_strings":["Neurobiology, University of Alabama at Birmingham Birmingham, Alabama"],"affiliations":[{"raw_affiliation_string":"Neurobiology, University of Alabama at Birmingham Birmingham, Alabama","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084732782","display_name":"Purushotham Bangalore","orcid":"https://orcid.org/0000-0002-1098-9997"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Purushotham V. Bangalore","raw_affiliation_strings":["Computer Science, Research Computing University of Alabama at Birmingham Birmingham, Alabama"],"affiliations":[{"raw_affiliation_string":"Computer Science, Research Computing University of Alabama at Birmingham Birmingham, Alabama","institution_ids":["https://openalex.org/I32389192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5052611551"],"corresponding_institution_ids":["https://openalex.org/I32389192"],"apc_list":null,"apc_paid":null,"fwci":0.254,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.54355944,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.888641357421875},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8362664580345154},{"id":"https://openalex.org/keywords/human-connectome-project","display_name":"Human Connectome Project","score":0.6894307732582092},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.5996547937393188},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.5111790299415588},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4760417938232422},{"id":"https://openalex.org/keywords/workflow-engine","display_name":"Workflow engine","score":0.43572917580604553},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.43065983057022095},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3316558301448822},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.28526657819747925},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2609202563762665}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.888641357421875},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8362664580345154},{"id":"https://openalex.org/C97820695","wikidata":"https://www.wikidata.org/wiki/Q387749","display_name":"Human Connectome Project","level":3,"score":0.6894307732582092},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.5996547937393188},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.5111790299415588},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4760417938232422},{"id":"https://openalex.org/C188220564","wikidata":"https://www.wikidata.org/wiki/Q3325097","display_name":"Workflow engine","level":3,"score":0.43572917580604553},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.43065983057022095},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3316558301448822},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.28526657819747925},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2609202563762665},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.0},{"id":"https://openalex.org/C3018011982","wikidata":"https://www.wikidata.org/wiki/Q7316120","display_name":"Functional connectivity","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3219104.3219163","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3219104.3219163","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3219104.3219163","source":{"id":"https://openalex.org/S4306524298","display_name":"Proceedings of the Practice and Experience on Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Practice and Experience on Advanced Research Computing","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1909.03314","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1909.03314","pdf_url":"https://arxiv.org/pdf/1909.03314","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"doi:10.1145/3219104.3219163","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3219104.3219163","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3219104.3219163","source":{"id":"https://openalex.org/S4306524298","display_name":"Proceedings of the Practice and Experience on Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Practice and Experience on Advanced Research Computing","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1156672080","display_name":null,"funder_award_id":"U54MH091657","funder_id":"https://openalex.org/F4320332884","funder_display_name":"McDonnell Center for Systems Neuroscience"},{"id":"https://openalex.org/G1658616865","display_name":null,"funder_award_id":"1U54MH091657","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G18127403","display_name":null,"funder_award_id":"U54MH091657","funder_id":"https://openalex.org/F4320337385","funder_display_name":"NIH Blueprint for Neuroscience Research"},{"id":"https://openalex.org/G2228721946","display_name":null,"funder_award_id":"1U54MH09165","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2540626194","display_name":null,"funder_award_id":"U54MH091657","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5702696694","display_name":null,"funder_award_id":"OAC-1541310","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6934592148","display_name":null,"funder_award_id":"MH091657","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6935074504","display_name":null,"funder_award_id":"1U54MH091657","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8057642955","display_name":"CC*DNI Networking Infrastructure: A Dedicated High-Speed Campus Research Network","funder_award_id":"1541310","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8288279591","display_name":null,"funder_award_id":"1U54MH091657","funder_id":"https://openalex.org/F4320337385","funder_display_name":"NIH Blueprint for Neuroscience Research"},{"id":"https://openalex.org/G8299918676","display_name":null,"funder_award_id":"1U54MH091657","funder_id":"https://openalex.org/F4320332884","funder_display_name":"McDonnell Center for Systems Neuroscience"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310431","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205"},{"id":"https://openalex.org/F4320312852","display_name":"University of Alabama","ror":"https://ror.org/03xrrjk67"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332884","display_name":"McDonnell Center for Systems Neuroscience","ror":"https://ror.org/01yc7t268"},{"id":"https://openalex.org/F4320337385","display_name":"NIH Blueprint for Neuroscience Research","ror":"https://ror.org/012wp4251"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2875719337.pdf","grobid_xml":"https://content.openalex.org/works/W2875719337.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1976381032","https://openalex.org/W1983208069","https://openalex.org/W2000133863","https://openalex.org/W2003610585","https://openalex.org/W2020519533","https://openalex.org/W2025065484","https://openalex.org/W2142059961","https://openalex.org/W2142096121","https://openalex.org/W2977883299","https://openalex.org/W4246298021"],"related_works":["https://openalex.org/W2356038787","https://openalex.org/W2368797771","https://openalex.org/W2356466503","https://openalex.org/W2054854316","https://openalex.org/W2352774566","https://openalex.org/W2370201914","https://openalex.org/W1998651692","https://openalex.org/W2107963358","https://openalex.org/W2373656887","https://openalex.org/W2049143847"],"abstract_inverted_index":{"This":[0,95],"paper":[1],"documents":[2],"the":[3,6,16,35,47,57,102,105,141],"experience":[4],"improving":[5],"performance":[7],"of":[8,15,37,43,64,104,128,143],"a":[9,38,60,79,83,88,93,98],"data":[10,21],"processing":[11],"workflow":[12,51,58,96],"for":[13],"analysis":[14],"Human":[17],"Connectome":[18],"Project's":[19],"HCP900":[20],"set.":[22],"It":[23,119],"describes":[24],"how":[25],"network":[26,117],"and":[27,32,112,146],"compute":[28,107],"bottlenecks":[29],"were":[30],"discovered":[31],"resolved":[33],"during":[34],"course":[36],"science":[39],"engagement.":[40],"A":[41],"series":[42],"computational":[44],"enhancements":[45,55,115],"to":[46,71,87,101,116,126,131],"stock":[48],"FSL":[49],"BedpostX":[50],"are":[52],"described.":[53],"These":[54],"migrated":[56],"from":[59,67,78],"slow":[61],"serial":[62],"execution":[63,73,81,91],"computations":[65],"resulting":[66],"Slurm":[68],"scheduler":[69],"incompatibilities":[70],"eventual":[72],"on":[74,82,92,123],"GPU":[75],"resources,":[76],"going":[77],"21-day":[80],"single":[84],"CPU":[85],"core":[86],"2":[89],"hour":[90],"GPU.":[94],"contributed":[97],"vital":[99],"use-case":[100],"build-out":[103],"campus":[106],"cluster":[108],"with":[109],"additional":[110],"GPUs":[111],"resulted":[113],"in":[114,134,153],"bandwidth.":[118],"also":[120],"shares":[121],"insights":[122],"potential":[124],"improvements":[125],"distribution":[127],"scientific":[129],"software":[130],"avoid":[132],"stagnation":[133],"site-specific":[135],"deployment":[136],"decisions.":[137],"The":[138],"discussion":[139],"highlights":[140],"advantages":[142],"open":[144],"licenses":[145],"popular":[147],"code":[148],"collaboration":[149],"sites":[150],"like":[151],"GitHub.com":[152],"feeding":[154],"contributions":[155],"upstream.":[156]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2018-07-19T00:00:00"}
