{"id":"https://openalex.org/W2809195560","doi":"https://doi.org/10.1145/3195970.3196098","title":"RADAR","display_name":"RADAR","publication_year":2018,"publication_date":"2018-06-19","ids":{"openalex":"https://openalex.org/W2809195560","doi":"https://doi.org/10.1145/3195970.3196098","mag":"2809195560"},"language":"en","primary_location":{"id":"doi:10.1145/3195970.3196098","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3195970.3196098","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3195970.3196098","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 55th Annual Design Automation Conference","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3195970.3196098","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075671139","display_name":"Wenqin Huangfu","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wenqin Huangfu","raw_affiliation_strings":["University of California at Santa Barbara"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California at Santa Barbara","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102837743","display_name":"Shuangchen Li","orcid":"https://orcid.org/0009-0003-6986-0463"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuangchen Li","raw_affiliation_strings":["University of California at Santa Barbara"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California at Santa Barbara","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082604341","display_name":"Xing Hu","orcid":"https://orcid.org/0000-0003-1930-0372"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xing Hu","raw_affiliation_strings":["University of California at Santa Barbara"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California at Santa Barbara","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100385336","display_name":"Yuan Xie","orcid":"https://orcid.org/0000-0003-2093-1788"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuan Xie","raw_affiliation_strings":["University of California at Santa Barbara"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California at Santa Barbara","institution_ids":["https://openalex.org/I154570441"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I154570441"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.779437780380249},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.7108529806137085},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5549039244651794},{"id":"https://openalex.org/keywords/radar","display_name":"Radar","score":0.4838367998600006},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4669889807701111},{"id":"https://openalex.org/keywords/volume","display_name":"Volume (thermodynamics)","score":0.44480758905410767},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.44465920329093933},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39735549688339233},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.10069367289543152}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.779437780380249},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.7108529806137085},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5549039244651794},{"id":"https://openalex.org/C554190296","wikidata":"https://www.wikidata.org/wiki/Q47528","display_name":"Radar","level":2,"score":0.4838367998600006},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4669889807701111},{"id":"https://openalex.org/C20556612","wikidata":"https://www.wikidata.org/wiki/Q4469374","display_name":"Volume (thermodynamics)","level":2,"score":0.44480758905410767},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.44465920329093933},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39735549688339233},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.10069367289543152},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3195970.3196098","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3195970.3196098","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3195970.3196098","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 55th Annual Design Automation Conference","raw_type":"proceedings-article"},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-133382","is_oa":false,"landing_page_url":"https://repository.hkust.edu.hk/ir/Record/1783.1-133382","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference paper"}],"best_oa_location":{"id":"doi:10.1145/3195970.3196098","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3195970.3196098","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3195970.3196098","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 55th Annual Design Automation Conference","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G233208875","display_name":null,"funder_award_id":"1533933 and 1719160","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3069263526","display_name":"SHF:SMALL: MECAR: Memory-Centric Architecture to Bridge the Gap Between Computing and Memory","funder_award_id":"1719160","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7199005434","display_name":null,"funder_award_id":"DE-SC0013553","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G801074273","display_name":"XPS: FULL: DSD: Collaborative Research: Parallelizing and Accelerating Metagenomic Applications","funder_award_id":"1533933","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2809195560.pdf","grobid_xml":"https://content.openalex.org/works/W2809195560.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W163711237","https://openalex.org/W1952777572","https://openalex.org/W1978885894","https://openalex.org/W2006232962","https://openalex.org/W2010202670","https://openalex.org/W2020704360","https://openalex.org/W2049381570","https://openalex.org/W2055043387","https://openalex.org/W2060022314","https://openalex.org/W2061680337","https://openalex.org/W2072177669","https://openalex.org/W2080842640","https://openalex.org/W2087064593","https://openalex.org/W2133008414","https://openalex.org/W2142144850","https://openalex.org/W2142619120","https://openalex.org/W2158714788","https://openalex.org/W2347026124","https://openalex.org/W2536491920","https://openalex.org/W2537255992"],"related_works":["https://openalex.org/W17155033","https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W1590307681","https://openalex.org/W4312814274","https://openalex.org/W4285370786","https://openalex.org/W2296488620","https://openalex.org/W2358353312","https://openalex.org/W2353836703","https://openalex.org/W41015297"],"abstract_inverted_index":{"Next":[0],"Generation":[1],"Sequencing":[2],"(NGS)":[3],"technology":[4],"has":[5],"become":[6],"an":[7,15],"indispensable":[8],"tool":[9],"for":[10,31],"studying":[11],"genomics,":[12],"resulting":[13],"in":[14,40],"exponentially":[16],"growth":[17],"of":[18],"biological":[19],"data.":[20],"Booming":[21],"data":[22,83],"volume":[23],"demands":[24],"significant":[25],"computational":[26,80],"resources":[27],"and":[28,48,88],"creates":[29],"challenges":[30],"'Sequence":[32],"Alignment',":[33],"which":[34],"is":[35,85],"the":[36,53,77],"most":[37,54],"fundamental":[38],"application":[39],"bioinformatics.":[41],"Consequently,":[42],"many":[43],"researchers":[44],"exploit":[45],"both":[46,86],"software":[47],"hardware":[49],"methods":[50],"to":[51,79],"accelerate":[52],"widely":[55],"used":[56],"sequence":[57],"alignment":[58],"algorithm":[59],"-":[60],"Basic":[61],"Local":[62],"Alignment":[63],"Search":[64],"Tool":[65],"(BLAST).":[66],"However,":[67],"prior":[68],"work":[69],"suffers":[70],"from":[71,76],"moving":[72],"huge":[73],"DNA":[74],"databases":[75],"storage":[78],"units.":[81],"Such":[82],"movement":[84],"time":[87],"energy":[89],"consuming.":[90]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":9}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2018-06-29T00:00:00"}
