{"id":"https://openalex.org/W2894351292","doi":"https://doi.org/10.1145/3191315.3191323","title":"Exploring life: answer set programming in bioinformatics","display_name":"Exploring life: answer set programming in bioinformatics","publication_year":2018,"publication_date":"2018-09-01","ids":{"openalex":"https://openalex.org/W2894351292","doi":"https://doi.org/10.1145/3191315.3191323","mag":"2894351292"},"language":"en","primary_location":{"id":"doi:10.1145/3191315.3191323","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3191315.3191323","pdf_url":null,"source":{"id":"https://openalex.org/S4306462769","display_name":"ACM eBooks","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"ebook platform"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Declarative Logic Programming: Theory, Systems, and Applications","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046219129","display_name":"Alessandro Dal Pal\u00f9","orcid":"https://orcid.org/0000-0003-0353-158X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Alessandro Dal Palu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064407367","display_name":"Agostino Dovier","orcid":"https://orcid.org/0000-0003-2052-8593"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Agostino Dovier","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049720199","display_name":"Andrea Formisano","orcid":"https://orcid.org/0000-0002-6755-9314"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andrea Formisano","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5024528910","display_name":"Enrico Pontelli","orcid":"https://orcid.org/0000-0002-7753-1737"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Enrico Pontelli","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046219129"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5147,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.68537998,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"359","last_page":"412"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11010","display_name":"Logic, Reasoning, and Knowledge","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11010","display_name":"Logic, Reasoning, and Knowledge","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10456","display_name":"Multi-Agent Systems and Negotiation","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10906","display_name":"AI-based Problem Solving and Planning","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6643659472465515},{"id":"https://openalex.org/keywords/answer-set-programming","display_name":"Answer set programming","score":0.6050319671630859},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.578486979007721},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5609613656997681},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.515347421169281},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.389814168214798},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3860738277435303},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34926825761795044},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.336849182844162},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3263324499130249},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2993199825286865},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17637062072753906},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10378071665763855}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6643659472465515},{"id":"https://openalex.org/C182620335","wikidata":"https://www.wikidata.org/wiki/Q2852531","display_name":"Answer set programming","level":3,"score":0.6050319671630859},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.578486979007721},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5609613656997681},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.515347421169281},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.389814168214798},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3860738277435303},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34926825761795044},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.336849182844162},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3263324499130249},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2993199825286865},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17637062072753906},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10378071665763855},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3191315.3191323","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3191315.3191323","pdf_url":null,"source":{"id":"https://openalex.org/S4306462769","display_name":"ACM eBooks","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"ebook platform"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Declarative Logic Programming: Theory, Systems, and Applications","raw_type":"book-chapter"},{"id":"pmh:oai:air.uniud.it:11390/1138453","is_oa":false,"landing_page_url":"https://dl.acm.org/citation.cfm?id=3191323","pdf_url":null,"source":{"id":"https://openalex.org/S4306401163","display_name":"Institutional Research Information System (University of Udine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129043915","host_organization_name":"University of Udine","host_organization_lineage":["https://openalex.org/I129043915"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"internazionale"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":165,"referenced_works":["https://openalex.org/W5318176","https://openalex.org/W16813012","https://openalex.org/W18651725","https://openalex.org/W31561947","https://openalex.org/W46504546","https://openalex.org/W59998372","https://openalex.org/W122202356","https://openalex.org/W149500278","https://openalex.org/W150122547","https://openalex.org/W154417448","https://openalex.org/W160876790","https://openalex.org/W179429006","https://openalex.org/W186611765","https://openalex.org/W192939834","https://openalex.org/W202273282","https://openalex.org/W633291512","https://openalex.org/W1482498688","https://openalex.org/W1490937614","https://openalex.org/W1508225465","https://openalex.org/W1508912896","https://openalex.org/W1527654060","https://openalex.org/W1534140321","https://openalex.org/W1538169066","https://openalex.org/W1539707058","https://openalex.org/W1544578519","https://openalex.org/W1544923801","https://openalex.org/W1548843388","https://openalex.org/W1549823682","https://openalex.org/W1550624980","https://openalex.org/W1550665603","https://openalex.org/W1553280782","https://openalex.org/W1555419827","https://openalex.org/W1557104565","https://openalex.org/W1560531798","https://openalex.org/W1566423428","https://openalex.org/W1574161662","https://openalex.org/W1574253784","https://openalex.org/W1592376903","https://openalex.org/W1606891084","https://openalex.org/W1620154602","https://openalex.org/W1639901403","https://openalex.org/W1652823179","https://openalex.org/W1665462343","https://openalex.org/W1672891595","https://openalex.org/W1673404489","https://openalex.org/W1810547309","https://openalex.org/W1845127254","https://openalex.org/W1937581028","https://openalex.org/W1964680470","https://openalex.org/W1966910443","https://openalex.org/W1969965298","https://openalex.org/W1974036812","https://openalex.org/W1975975525","https://openalex.org/W1979230873","https://openalex.org/W1984675364","https://openalex.org/W1988226737","https://openalex.org/W1989284002","https://openalex.org/W1990061958","https://openalex.org/W1991804333","https://openalex.org/W1993524183","https://openalex.org/W1994013891","https://openalex.org/W1997780525","https://openalex.org/W2000191287","https://openalex.org/W2000501190","https://openalex.org/W2003939846","https://openalex.org/W2004389753","https://openalex.org/W2004805762","https://openalex.org/W2005486846","https://openalex.org/W2007052447","https://openalex.org/W2008323735","https://openalex.org/W2012450576","https://openalex.org/W2012798676","https://openalex.org/W2014205104","https://openalex.org/W2017302704","https://openalex.org/W2017898908","https://openalex.org/W2024811317","https://openalex.org/W2025489760","https://openalex.org/W2025763720","https://openalex.org/W2033191733","https://openalex.org/W2039718357","https://openalex.org/W2039992864","https://openalex.org/W2041404570","https://openalex.org/W2045777307","https://openalex.org/W2045956789","https://openalex.org/W2048583196","https://openalex.org/W2051646486","https://openalex.org/W2053846587","https://openalex.org/W2055043387","https://openalex.org/W2055214702","https://openalex.org/W2058449810","https://openalex.org/W2067484689","https://openalex.org/W2069650148","https://openalex.org/W2070200042","https://openalex.org/W2070783701","https://openalex.org/W2075599722","https://openalex.org/W2076756368","https://openalex.org/W2082527422","https://openalex.org/W2084895856","https://openalex.org/W2085915668","https://openalex.org/W2089057971","https://openalex.org/W2091251097","https://openalex.org/W2093999627","https://openalex.org/W2095145214","https://openalex.org/W2097436987","https://openalex.org/W2100724754","https://openalex.org/W2101324644","https://openalex.org/W2103554021","https://openalex.org/W2103616991","https://openalex.org/W2104059401","https://openalex.org/W2105753008","https://openalex.org/W2107189447","https://openalex.org/W2107985055","https://openalex.org/W2109347434","https://openalex.org/W2109457118","https://openalex.org/W2109887043","https://openalex.org/W2110917138","https://openalex.org/W2111480583","https://openalex.org/W2113251142","https://openalex.org/W2115895293","https://openalex.org/W2116137060","https://openalex.org/W2116802997","https://openalex.org/W2117020466","https://openalex.org/W2119510512","https://openalex.org/W2126877057","https://openalex.org/W2128607739","https://openalex.org/W2130038846","https://openalex.org/W2131973340","https://openalex.org/W2133109597","https://openalex.org/W2133995634","https://openalex.org/W2134599124","https://openalex.org/W2138618671","https://openalex.org/W2142319534","https://openalex.org/W2142747156","https://openalex.org/W2150695558","https://openalex.org/W2152131859","https://openalex.org/W2152214314","https://openalex.org/W2153314828","https://openalex.org/W2156622158","https://openalex.org/W2159155807","https://openalex.org/W2159713662","https://openalex.org/W2161960556","https://openalex.org/W2163721943","https://openalex.org/W2164208322","https://openalex.org/W2164557791","https://openalex.org/W2164754295","https://openalex.org/W2166165220","https://openalex.org/W2166645278","https://openalex.org/W2167879794","https://openalex.org/W2170135702","https://openalex.org/W2170251198","https://openalex.org/W2171851694","https://openalex.org/W2193813835","https://openalex.org/W2245874823","https://openalex.org/W2274746072","https://openalex.org/W2283350629","https://openalex.org/W2326953575","https://openalex.org/W2398302976","https://openalex.org/W2489066146","https://openalex.org/W2577274998","https://openalex.org/W2729119190","https://openalex.org/W2738925829","https://openalex.org/W2748594262","https://openalex.org/W2894189715","https://openalex.org/W2963500706","https://openalex.org/W3105413812"],"related_works":["https://openalex.org/W2092211394","https://openalex.org/W2140698704","https://openalex.org/W2891226953","https://openalex.org/W2055243143","https://openalex.org/W2601354222","https://openalex.org/W1903938722","https://openalex.org/W4386211115","https://openalex.org/W4385821813","https://openalex.org/W3008962280","https://openalex.org/W1630259549"],"abstract_inverted_index":{"This":[0],"chapter":[1,39,73,93],"provides":[2,119],"a":[3,75,95,101,105],"broad":[4],"overview":[5],"of":[6,28,34,43,104,107,130,143],"howlogic":[7],"programming,":[8],"and":[9,21,25,52,64,68,80,82,116,146],"more":[10],"specifically":[11],"Answer":[12],"Set":[13],"Programming":[14],"(ASP),":[15],"can":[16],"be":[17],"used":[18],"to":[19,78,123,133,148],"model":[20],"solve":[22],"some":[23],"popular":[24],"challenging":[26],"classes":[27],"problems":[29,90,109],"in":[30,45,55,69,110],"the":[31,38,41,88,124,128,140,144,149],"general":[32],"domain":[33],"bioinformatics.":[35],"In":[36],"particular,":[37],"explores":[40],"use":[42,129],"ASP":[44,84],"Genomics":[46],"studies,":[47,57],"such":[48,58,135],"as":[49,59],"Haplotype":[50],"inference":[51],"Phylogenetic":[53],"inference,":[54],"Structural":[56],"RNA":[60],"secondary":[61],"structure":[62,66],"prediction":[63],"Protein":[65],"prediction,":[67],"Systems":[70],"Biology.":[71],"The":[72,92],"offers":[74,100],"brief":[76],"introduction":[77],"biology":[79],"bioinformatics":[81,136],"working":[83],"code":[85],"fragments":[86],"for":[87],"various":[89],"investigated.":[91],"serves":[94],"dual":[96],"role:":[97],"(1)":[98],"it":[99,118],"declarative":[102],"characterization":[103],"number":[106],"core":[108],"bioinformatics,":[111],"making":[112],"them":[113],"easily":[114],"understandable;":[115],"(2)":[117],"an":[120],"\"entry":[121],"point\"":[122],"extensive":[125],"literature":[126],"on":[127],"logic-based":[131],"methods":[132],"address":[134],"problems,":[137],"by":[138],"offering":[139],"basic":[141],"modeling":[142],"problem":[145],"pointers":[147],"relevant":[150],"literature.":[151]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
