{"id":"https://openalex.org/W2799687610","doi":"https://doi.org/10.1145/3177874","title":"Machine Reading of Biomedical Data Dictionaries","display_name":"Machine Reading of Biomedical Data Dictionaries","publication_year":2017,"publication_date":"2017-12-31","ids":{"openalex":"https://openalex.org/W2799687610","doi":"https://doi.org/10.1145/3177874","mag":"2799687610"},"language":"en","primary_location":{"id":"doi:10.1145/3177874","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3177874","pdf_url":null,"source":{"id":"https://openalex.org/S110189822","display_name":"Journal of Data and Information Quality","issn_l":"1936-1955","issn":["1936-1955","1936-1963"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Data and Information Quality","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034548846","display_name":"Naveen Ashish","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Naveen Ashish","raw_affiliation_strings":["Hutch Data Commonwealth, Fred Hutchinson Cancer Research Center, Seattle WA"],"affiliations":[{"raw_affiliation_string":"Hutch Data Commonwealth, Fred Hutchinson Cancer Research Center, Seattle WA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035691684","display_name":"Arihant Patawari","orcid":null},"institutions":[{"id":"https://openalex.org/I1301076528","display_name":"City Of Hope National Medical Center","ror":"https://ror.org/00w6g5w60","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1301076528"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arihant Patawari","raw_affiliation_strings":["City of Hope, National Medical Center, Duarte, CA"],"affiliations":[{"raw_affiliation_string":"City of Hope, National Medical Center, Duarte, CA","institution_ids":["https://openalex.org/I1301076528"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5034548846"],"corresponding_institution_ids":["https://openalex.org/I4210089486"],"apc_list":null,"apc_paid":null,"fwci":0.195,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.65756305,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"9","issue":"4","first_page":"1","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11550","display_name":"Text and Document Classification Technologies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.890405535697937},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7256363034248352},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.6228770017623901},{"id":"https://openalex.org/keywords/reading","display_name":"Reading (process)","score":0.5582185983657837},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5249188542366028},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5166414380073547},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5076569318771362},{"id":"https://openalex.org/keywords/data-dictionary","display_name":"Data dictionary","score":0.47478100657463074},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45756441354751587},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.45213407278060913},{"id":"https://openalex.org/keywords/external-data-representation","display_name":"External Data Representation","score":0.44810619950294495},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4319491982460022},{"id":"https://openalex.org/keywords/data-element","display_name":"Data element","score":0.4302127957344055},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.4286808669567108},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.41683584451675415},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3216453790664673},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.13857445120811462},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10039636492729187}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.890405535697937},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7256363034248352},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.6228770017623901},{"id":"https://openalex.org/C554936623","wikidata":"https://www.wikidata.org/wiki/Q199657","display_name":"Reading (process)","level":2,"score":0.5582185983657837},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5249188542366028},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5166414380073547},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5076569318771362},{"id":"https://openalex.org/C98143201","wikidata":"https://www.wikidata.org/wiki/Q1147639","display_name":"Data dictionary","level":3,"score":0.47478100657463074},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45756441354751587},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.45213407278060913},{"id":"https://openalex.org/C116409475","wikidata":"https://www.wikidata.org/wiki/Q1385056","display_name":"External Data Representation","level":2,"score":0.44810619950294495},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4319491982460022},{"id":"https://openalex.org/C30872290","wikidata":"https://www.wikidata.org/wiki/Q1172389","display_name":"Data element","level":3,"score":0.4302127957344055},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4286808669567108},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.41683584451675415},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3216453790664673},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.13857445120811462},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10039636492729187},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3177874","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3177874","pdf_url":null,"source":{"id":"https://openalex.org/S110189822","display_name":"Journal of Data and Information Quality","issn_l":"1936-1955","issn":["1936-1955","1936-1963"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Data and Information Quality","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.8500000238418579}],"awards":[{"id":"https://openalex.org/G923484288","display_name":null,"funder_award_id":"003278-0001","funder_id":"https://openalex.org/F4320306219","funder_display_name":"Alzheimer's Association"}],"funders":[{"id":"https://openalex.org/F4320306219","display_name":"Alzheimer's Association","ror":"https://ror.org/0375f4d26"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1227309037","https://openalex.org/W1511676561","https://openalex.org/W1555624686","https://openalex.org/W1826790618","https://openalex.org/W1840063680","https://openalex.org/W1958077162","https://openalex.org/W2034797903","https://openalex.org/W2042448356","https://openalex.org/W2093559286","https://openalex.org/W2096496923","https://openalex.org/W2102189859","https://openalex.org/W2109140840","https://openalex.org/W2131240202","https://openalex.org/W2133990480","https://openalex.org/W2136500370","https://openalex.org/W2143309843","https://openalex.org/W2147880316","https://openalex.org/W2148317291","https://openalex.org/W2294792814"],"related_works":["https://openalex.org/W4252641600","https://openalex.org/W3199469221","https://openalex.org/W2374379029","https://openalex.org/W2141068080","https://openalex.org/W2362378919","https://openalex.org/W3084772717","https://openalex.org/W2143141804","https://openalex.org/W2555822790","https://openalex.org/W4236158639","https://openalex.org/W2506176693"],"abstract_inverted_index":{"This":[0],"article":[1],"describes":[2],"an":[3,76,115],"approach":[4,77],"for":[5,22,81],"the":[6,16,25,50,68,71,82,96,106,123],"automated":[7],"reading":[8,14],"of":[9,18,24,70,87,125],"biomedical":[10],"data":[11,26,30,51,62,88,120],"dictionaries.":[12,89],"Automated":[13],"is":[15,47],"process":[17],"extracting":[19],"element":[20],"details":[21],"each":[23],"elements":[27],"from":[28],"a":[29,33,40,92,101],"dictionary":[31,52],"in":[32,58,66],"document":[34],"format":[35,99],"(such":[36],"as":[37,61],"PDF)":[38],"to":[39,55,105],"completely":[41],"structured":[42,45],"representation.":[43],"A":[44],"representation":[46],"essential":[48],"if":[49],"metadata":[53],"are":[54],"be":[56],"used":[57],"applications":[59],"such":[60],"integration":[63],"and":[64,78],"also":[65],"evaluating":[67],"quality":[69],"associated":[72],"data.":[73],"We":[74,90,113],"present":[75,114],"implemented":[79],"solution":[80,104],"problem,":[83],"considering":[84],"different":[85],"formats":[86],"have":[91],"particular":[93],"focus":[94],"on":[95],"most":[97],"challenging":[98],"with":[100],"machine-learning":[102],"classification":[103],"problem":[107],"using":[108,117],"conditional":[109],"random":[110],"field":[111],"classifiers.":[112],"evaluation":[116],"several":[118],"actual":[119],"dictionaries,":[121],"demonstrating":[122],"effectiveness":[124],"our":[126],"approach.":[127]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
