{"id":"https://openalex.org/W2767932261","doi":"https://doi.org/10.1145/3126908.3126930","title":"A framework for scalable biophysics-based image analysis","display_name":"A framework for scalable biophysics-based image analysis","publication_year":2017,"publication_date":"2017-11-08","ids":{"openalex":"https://openalex.org/W2767932261","doi":"https://doi.org/10.1145/3126908.3126930","mag":"2767932261"},"language":"en","primary_location":{"id":"doi:10.1145/3126908.3126930","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3126908.3126930","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114047203","display_name":"Amir Gholami","orcid":null},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amir Gholami","raw_affiliation_strings":["University of Texas at Austin"],"affiliations":[{"raw_affiliation_string":"University of Texas at Austin","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017333493","display_name":"Andreas Mang","orcid":"https://orcid.org/0000-0003-4605-3290"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andreas Mang","raw_affiliation_strings":["University of Texas at Austin"],"affiliations":[{"raw_affiliation_string":"University of Texas at Austin","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051660675","display_name":"Klaudius Scheufele","orcid":"https://orcid.org/0000-0003-0926-4339"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Klaudius Scheufele","raw_affiliation_strings":["University of Stuttgart, Stuttgart"],"affiliations":[{"raw_affiliation_string":"University of Stuttgart, Stuttgart","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034999945","display_name":"Christos Davatzikos","orcid":"https://orcid.org/0000-0002-1025-8561"},"institutions":[{"id":"https://openalex.org/I36788626","display_name":"California University of Pennsylvania","ror":"https://ror.org/01spssf70","country_code":"US","type":"education","lineage":["https://openalex.org/I36788626"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christos Davatzikos","raw_affiliation_strings":["University of Pennsylvania"],"affiliations":[{"raw_affiliation_string":"University of Pennsylvania","institution_ids":["https://openalex.org/I36788626"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113995384","display_name":"Miriam Mehl","orcid":null},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Miriam Mehl","raw_affiliation_strings":["University of Stuttgart, Stuttgart"],"affiliations":[{"raw_affiliation_string":"University of Stuttgart, Stuttgart","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044137409","display_name":"George Biros","orcid":"https://orcid.org/0000-0002-0033-3994"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George Biros","raw_affiliation_strings":["University of Texas at Austin"],"affiliations":[{"raw_affiliation_string":"University of Texas at Austin","institution_ids":["https://openalex.org/I86519309"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5114047203"],"corresponding_institution_ids":["https://openalex.org/I86519309"],"apc_list":null,"apc_paid":null,"fwci":0.9062,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.76251406,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6366920471191406},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5429818630218506},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.4349735975265503},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2961280345916748}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6366920471191406},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5429818630218506},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.4349735975265503},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2961280345916748},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3126908.3126930","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3126908.3126930","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis","raw_type":"proceedings-article"},{"id":"pmh:oai:informatik.uni-stuttgart.de:INPROC-2017-61","is_oa":false,"landing_page_url":"http://www2.informatik.uni-stuttgart.de/cgi-bin/NCSTRL/NCSTRL_view.pl?id=INPROC-2017-61&engl=1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401306","display_name":"Fachbereich Informatik (University of Stuttgart)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I100066346","host_organization_name":"University of Stuttgart","host_organization_lineage":["https://openalex.org/I100066346"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"\\n            In: Proceedings of the International Conference for High Performance\\n            Computing, Networking, Storage and Analysis, SC17, pp. 1-13\\n          ","raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":67,"referenced_works":["https://openalex.org/W46507908","https://openalex.org/W90568776","https://openalex.org/W278553617","https://openalex.org/W433418221","https://openalex.org/W564060940","https://openalex.org/W1272383281","https://openalex.org/W1509342228","https://openalex.org/W1566255995","https://openalex.org/W1579634341","https://openalex.org/W1596353749","https://openalex.org/W1600371943","https://openalex.org/W1641498739","https://openalex.org/W1723524309","https://openalex.org/W1741578612","https://openalex.org/W1963605855","https://openalex.org/W1963825970","https://openalex.org/W1969922802","https://openalex.org/W1990245134","https://openalex.org/W2000376553","https://openalex.org/W2010114799","https://openalex.org/W2012205781","https://openalex.org/W2022977680","https://openalex.org/W2024524081","https://openalex.org/W2030017300","https://openalex.org/W2037316890","https://openalex.org/W2048369486","https://openalex.org/W2050687114","https://openalex.org/W2051820877","https://openalex.org/W2055577088","https://openalex.org/W2059925335","https://openalex.org/W2067470376","https://openalex.org/W2078708982","https://openalex.org/W2090808267","https://openalex.org/W2104572044","https://openalex.org/W2113446415","https://openalex.org/W2115167851","https://openalex.org/W2123498585","https://openalex.org/W2124257562","https://openalex.org/W2130257210","https://openalex.org/W2133560833","https://openalex.org/W2138328476","https://openalex.org/W2140980608","https://openalex.org/W2143143237","https://openalex.org/W2143401725","https://openalex.org/W2143941386","https://openalex.org/W2145804351","https://openalex.org/W2146865853","https://openalex.org/W2147938585","https://openalex.org/W2157358125","https://openalex.org/W2160905891","https://openalex.org/W2161543607","https://openalex.org/W2168231032","https://openalex.org/W2170167891","https://openalex.org/W2178072147","https://openalex.org/W2271001417","https://openalex.org/W2513782122","https://openalex.org/W2559641486","https://openalex.org/W2561675875","https://openalex.org/W2793250790","https://openalex.org/W2963756161","https://openalex.org/W3029645440","https://openalex.org/W3099638453","https://openalex.org/W3100638867","https://openalex.org/W3102487335","https://openalex.org/W3106325579","https://openalex.org/W4292414053","https://openalex.org/W6837587971"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2389214306","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829"],"abstract_inverted_index":{"We":[0,79,118],"present":[1,80],"SIBIA":[2,54,158],"(Scalable":[3],"Integrated":[4],"Biophysics-based":[5],"Image":[6],"Analysis),":[7],"a":[8,56,71],"framework":[9],"for":[10,21,75,85],"coupling":[11],"biophysical":[12],"models":[13],"with":[14],"medical":[15],"image":[16,31,94],"analysis.":[17],"It":[18],"provides":[19],"solvers":[20],"an":[22,30],"image-driven":[23],"inverse":[24,90],"brain":[25,46],"tumor":[26,91],"growth":[27],"model":[28],"and":[29,43,70,82,93,108],"registration":[32,95,131],"problem,":[33],"the":[34,63,86,89,103,112,150,164],"combination":[35],"of":[36,45,53,133,155],"which":[37],"can":[38,126],"eventually":[39],"help":[40],"in":[41,62,138],"diagnosis":[42],"prognosis":[44],"tumors.":[47],"The":[48],"two":[49,97],"main":[50],"computational":[51,87],"kernels":[52],"are":[55],"Fast":[57],"Fourier":[58],"Transformation":[59],"(FFT)":[60],"implemented":[61],"library":[64],"AccFFT":[65],"to":[66,129],"discretize":[67],"differential":[68],"operators,":[69],"cubic":[72],"interpolation":[73],"kernel":[74],"semi-Lagrangian":[76],"based":[77],"advection.":[78],"efficiency":[81],"scalability":[83],"results":[84,120],"kernels,":[88],"solver":[92,125],"on":[96],"x86":[98],"systems,":[99],"Lonestar":[100],"5":[101],"at":[102,111],"Texas":[104],"Advanced":[105],"Computing":[106,116],"Center":[107],"Hazel":[109],"Hen":[110],"Stuttgart":[113],"High":[114],"Performance":[115],"Center.":[117],"showcase":[119],"that":[121,123,145],"demonstrate":[122],"our":[124],"be":[127],"used":[128],"solve":[130],"problems":[132],"unprecedented":[134],"scale,":[135],"40963":[136],"resulting":[137],"\u223c":[139],"200":[140],"billion":[141],"unknowns---a":[142],"problem":[143,153],"size":[144],"is":[146,159],"64X":[147],"larger":[148],"than":[149,163],"state-of-the-art.":[151,165],"For":[152],"sizes":[154],"clinical":[156],"interest,":[157],"about":[160],"8X":[161],"faster":[162]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}