{"id":"https://openalex.org/W2952400994","doi":"https://doi.org/10.1145/3121138.3121186","title":"High Accuracy Base Calls in Nanopore Sequencing","display_name":"High Accuracy Base Calls in Nanopore Sequencing","publication_year":2017,"publication_date":"2017-06-22","ids":{"openalex":"https://openalex.org/W2952400994","doi":"https://doi.org/10.1145/3121138.3121186","mag":"2952400994"},"language":"en","primary_location":{"id":"doi:10.1145/3121138.3121186","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3121138.3121186","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th International Conference on Bioinformatics and Biomedical Science","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000472520","display_name":"Philippe C. Faucon","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Philippe Faucon","raw_affiliation_strings":["School of Computing, Informatics, and Decision Systems Engineering, Arizona State University, Tempe, AZ, USA"],"affiliations":[{"raw_affiliation_string":"School of Computing, Informatics, and Decision Systems Engineering, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111940529","display_name":"Robert P. Trevi\u00f1o","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Trevino","raw_affiliation_strings":["School of Computing, Informatics, and Decision Systems Engineering, Arizona State University, Tempe, AZ, USA"],"affiliations":[{"raw_affiliation_string":"School of Computing, Informatics, and Decision Systems Engineering, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008377256","display_name":"Parithi Balachandran","orcid":"https://orcid.org/0000-0003-3256-1403"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Parithi Balachandran","raw_affiliation_strings":["School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ, USA"],"affiliations":[{"raw_affiliation_string":"School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078294528","display_name":"Kylie Standage-Beier","orcid":"https://orcid.org/0000-0001-5355-9359"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kylie Standage-Beier","raw_affiliation_strings":["School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ, USA"],"affiliations":[{"raw_affiliation_string":"School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101470256","display_name":"Xiao Wang","orcid":"https://orcid.org/0000-0002-4056-0155"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiao Wang","raw_affiliation_strings":["School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ, USA"],"affiliations":[{"raw_affiliation_string":"School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5000472520"],"corresponding_institution_ids":["https://openalex.org/I55732556"],"apc_list":null,"apc_paid":null,"fwci":0.126,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.53264025,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"12","last_page":"16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.9787999987602234,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.8124109506607056},{"id":"https://openalex.org/keywords/limiting","display_name":"Limiting","score":0.7183032631874084},{"id":"https://openalex.org/keywords/nanopore","display_name":"Nanopore","score":0.6549085378646851},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5737938284873962},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5667420029640198},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5104333758354187},{"id":"https://openalex.org/keywords/random-noise","display_name":"Random noise","score":0.4930970370769501},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.489379346370697},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.48836562037467957},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4776376783847809},{"id":"https://openalex.org/keywords/base","display_name":"Base (topology)","score":0.455615371465683},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3737204670906067},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32718169689178467},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27050262689590454},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2066236436367035},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.1673690676689148},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11814990639686584},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11458748579025269},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.07091778516769409}],"concepts":[{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.8124109506607056},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.7183032631874084},{"id":"https://openalex.org/C141795571","wikidata":"https://www.wikidata.org/wiki/Q580942","display_name":"Nanopore","level":2,"score":0.6549085378646851},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5737938284873962},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5667420029640198},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5104333758354187},{"id":"https://openalex.org/C2986577269","wikidata":"https://www.wikidata.org/wiki/Q11306265","display_name":"Random noise","level":2,"score":0.4930970370769501},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.489379346370697},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.48836562037467957},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4776376783847809},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.455615371465683},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3737204670906067},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32718169689178467},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27050262689590454},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2066236436367035},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.1673690676689148},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11814990639686584},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11458748579025269},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.07091778516769409},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3121138.3121186","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3121138.3121186","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th International Conference on Bioinformatics and Biomedical Science","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1519765314","https://openalex.org/W1579534339","https://openalex.org/W1983403167","https://openalex.org/W2007772656","https://openalex.org/W2025828346","https://openalex.org/W2055043387","https://openalex.org/W2082825869","https://openalex.org/W2141978199","https://openalex.org/W2157888653","https://openalex.org/W2158714788","https://openalex.org/W2189047836","https://openalex.org/W2210296741","https://openalex.org/W2259815689","https://openalex.org/W2293903575","https://openalex.org/W2323326409","https://openalex.org/W2337261418","https://openalex.org/W2342023238","https://openalex.org/W2598785105","https://openalex.org/W2950150251","https://openalex.org/W2950266744"],"related_works":["https://openalex.org/W2774675543","https://openalex.org/W2119052929","https://openalex.org/W2326282944","https://openalex.org/W2330402197","https://openalex.org/W3197006535","https://openalex.org/W3201371206","https://openalex.org/W2420153309","https://openalex.org/W2096970964","https://openalex.org/W3175842380","https://openalex.org/W2107323267"],"abstract_inverted_index":{"Nanopore":[0],"sequencing":[1],"has":[2,63],"introduced":[3,31],"the":[4,13,71,76,79],"ability":[5],"to":[6,48,66],"sequence":[7],"long":[8,22],"stretches":[9,23],"of":[10,15,24,73,78],"DNA,":[11],"enabling":[12],"resolution":[14],"repeating":[16],"segments,":[17],"or":[18,75],"paired":[19],"SNPs":[20],"across":[21],"DNA.":[25],"Unfortunately,":[26],"significant":[27],"error":[28],"rates":[29],">15%,":[30],"through":[32],"systematic":[33],"and":[34],"random":[35],"noise":[36],"inhibit":[37],"downstream":[38,54],"analysis.":[39],"We":[40,57],"propose":[41],"a":[42],"novel":[43],"method,":[44],"using":[45],"unsupervised":[46],"learning,":[47],"correct":[49],"biologically":[50],"amplified":[51],"reads":[52],"before":[53],"analysis":[55],"proceeds.":[56],"also":[58],"demonstrate":[59],"that":[60],"our":[61],"method":[62],"performance":[64],"comparable":[65],"existing":[67],"techniques":[68],"without":[69],"limiting":[70],"detection":[72],"repeats,":[74],"length":[77],"input":[80],"sequence.":[81]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}