{"id":"https://openalex.org/W2760558683","doi":"https://doi.org/10.1145/3121138.3121175","title":"The High Performance Computing Applications for Bioinformatics Research","display_name":"The High Performance Computing Applications for Bioinformatics Research","publication_year":2017,"publication_date":"2017-06-22","ids":{"openalex":"https://openalex.org/W2760558683","doi":"https://doi.org/10.1145/3121138.3121175","mag":"2760558683"},"language":"en","primary_location":{"id":"doi:10.1145/3121138.3121175","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3121138.3121175","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th International Conference on Bioinformatics and Biomedical Science","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101637628","display_name":"Jiakun Li","orcid":"https://orcid.org/0000-0003-1487-4967"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jia-kun Li","raw_affiliation_strings":["Southwest University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Southwest University, Chongqing, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100350625","display_name":"Le Zhang","orcid":"https://orcid.org/0000-0002-3708-1727"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Le Zhang","raw_affiliation_strings":["Southwest University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Southwest University, Chongqing, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101717292","display_name":"Ming Xiao","orcid":"https://orcid.org/0000-0001-8608-5903"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Xiao","raw_affiliation_strings":["Southwest University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Southwest University, Chongqing, China","institution_ids":["https://openalex.org/I142108993"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I142108993"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"70","last_page":"75"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9679999947547913,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8665835857391357},{"id":"https://openalex.org/keywords/simd","display_name":"SIMD","score":0.8068276643753052},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.7797501087188721},{"id":"https://openalex.org/keywords/mimd","display_name":"MIMD","score":0.729692280292511},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.6784767508506775},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5888410806655884},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.46517395973205566}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8665835857391357},{"id":"https://openalex.org/C150552126","wikidata":"https://www.wikidata.org/wiki/Q339387","display_name":"SIMD","level":2,"score":0.8068276643753052},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.7797501087188721},{"id":"https://openalex.org/C21032095","wikidata":"https://www.wikidata.org/wiki/Q1149237","display_name":"MIMD","level":2,"score":0.729692280292511},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.6784767508506775},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5888410806655884},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.46517395973205566}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3121138.3121175","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3121138.3121175","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th International Conference on Bioinformatics and Biomedical Science","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W164384110","https://openalex.org/W1513515886","https://openalex.org/W1531160357","https://openalex.org/W1555673550","https://openalex.org/W1567646530","https://openalex.org/W1597108197","https://openalex.org/W1785640384","https://openalex.org/W1875619160","https://openalex.org/W2006349710","https://openalex.org/W2017928178","https://openalex.org/W2028499920","https://openalex.org/W2058071327","https://openalex.org/W2096041635","https://openalex.org/W2097341408","https://openalex.org/W2117683095","https://openalex.org/W2119738171","https://openalex.org/W2121762798","https://openalex.org/W2122465391","https://openalex.org/W2133540884","https://openalex.org/W2139760555","https://openalex.org/W2141978878","https://openalex.org/W2146341019","https://openalex.org/W2155568054","https://openalex.org/W2163932369"],"related_works":["https://openalex.org/W1980986440","https://openalex.org/W3158884034","https://openalex.org/W2163078645","https://openalex.org/W4388314704","https://openalex.org/W2014030893","https://openalex.org/W1971361763","https://openalex.org/W2399578218","https://openalex.org/W2167983067","https://openalex.org/W156928674","https://openalex.org/W2125719717"],"abstract_inverted_index":{"This":[0],"study":[1],"reviews":[2],"the":[3,39,71,100,103],"current":[4],"high":[5,16,52,84],"performance":[6,17,53,85],"computing":[7,18,54,86],"applications":[8,55,87],"for":[9,56,88],"bioinformatics.":[10],"Firstly,":[11],"we":[12,35,47,67,79,98],"introduce":[13],"two":[14],"popular":[15,44,76],"architecture":[19],"such":[20,59,91],"as":[21,38,60,70,92],"single":[22],"instruction":[23,29],"multiple":[24,28,30],"data":[25,31],"(SIMD)":[26],"and":[27,63,95],"(MIMD).":[32],"For":[33,65],"SIMD,":[34],"employ":[36,68],"CUDA":[37,50],"example":[40,72],"to":[41,73],"show":[42,74],"its":[43,75],"applications.":[45,77],"Here,":[46],"detail":[48,80],"three":[49,81],"related":[51,83],"bioinformatics":[57,89],"research,":[58,90],"GPU-BLAST,":[61],"CloudAligner":[62],"SEAL.":[64],"MIMD,":[66],"Hadoop":[69,82],"Here":[78],"Clouldburst,":[93],"SOAP3":[94],"CLAST.":[96],"Finally,":[97],"summarize":[99],"aim":[101],"of":[102],"research.":[104]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
