{"id":"https://openalex.org/W2757165800","doi":"https://doi.org/10.1145/3121138.3121166","title":"Identification of Potential Critical Virulent Sites Based on Hemagglutinin of Influenza a Virus in Past Pandemic Strains","display_name":"Identification of Potential Critical Virulent Sites Based on Hemagglutinin of Influenza a Virus in Past Pandemic Strains","publication_year":2017,"publication_date":"2017-06-22","ids":{"openalex":"https://openalex.org/W2757165800","doi":"https://doi.org/10.1145/3121138.3121166","mag":"2757165800"},"language":"en","primary_location":{"id":"doi:10.1145/3121138.3121166","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3121138.3121166","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th International Conference on Bioinformatics and Biomedical Science","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://dr.ntu.edu.sg/bitstream/10356/102511/1/ICBBS_2017%28final%29_S0009.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077105641","display_name":"Rui Yin","orcid":"https://orcid.org/0000-0002-1403-0396"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Rui Yin","raw_affiliation_strings":["School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052706325","display_name":"Xinrui Zhou","orcid":"https://orcid.org/0000-0002-4079-6475"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Xinrui Zhou","raw_affiliation_strings":["School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010493793","display_name":"Fransiskus Xaverius Ivan","orcid":"https://orcid.org/0000-0001-6491-6358"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Fransiskus Xaverius Ivan","raw_affiliation_strings":["School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014529529","display_name":"Jie Zheng","orcid":"https://orcid.org/0000-0001-6774-9786"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Jie Zheng","raw_affiliation_strings":["School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026787939","display_name":"Vincent Chow","orcid":"https://orcid.org/0000-0003-2634-6213"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Vincent T. K. Chow","raw_affiliation_strings":["Department of Microbiology, Yong Loo Lin School of Medicine, National University of Singapore, Kent Ridge, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, Yong Loo Lin School of Medicine, National University of Singapore, Kent Ridge, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027208445","display_name":"Chee Keong Kwoh","orcid":"https://orcid.org/0000-0002-8547-6387"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Chee Keong Kwoh","raw_affiliation_strings":["School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore","institution_ids":["https://openalex.org/I172675005"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":8.584,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.97078189,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"30","last_page":"36"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pandemic","display_name":"Pandemic","score":0.8168913125991821},{"id":"https://openalex.org/keywords/virulence","display_name":"Virulence","score":0.8060252070426941},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.6041644811630249},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5882725119590759},{"id":"https://openalex.org/keywords/hemagglutinin","display_name":"Hemagglutinin (influenza)","score":0.5809651017189026},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5617358684539795},{"id":"https://openalex.org/keywords/pathogenicity","display_name":"Pathogenicity","score":0.5519060492515564},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5047112703323364},{"id":"https://openalex.org/keywords/influenza-pandemic","display_name":"Influenza pandemic","score":0.4908512234687805},{"id":"https://openalex.org/keywords/influenza-a-virus-subtype-h5n1","display_name":"Influenza A virus subtype H5N1","score":0.4375693202018738},{"id":"https://openalex.org/keywords/influenza-a-virus","display_name":"Influenza A virus","score":0.4351400136947632},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3211994171142578},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.2533183693885803},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.23711761832237244},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.176338791847229},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1689172089099884},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16255509853363037},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.1026984453201294},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.09978291392326355}],"concepts":[{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.8168913125991821},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.8060252070426941},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.6041644811630249},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5882725119590759},{"id":"https://openalex.org/C2778692840","wikidata":"https://www.wikidata.org/wiki/Q9136673","display_name":"Hemagglutinin (influenza)","level":3,"score":0.5809651017189026},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5617358684539795},{"id":"https://openalex.org/C64502627","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogenicity","level":2,"score":0.5519060492515564},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5047112703323364},{"id":"https://openalex.org/C3019926118","wikidata":"https://www.wikidata.org/wiki/Q2723958","display_name":"Influenza pandemic","level":5,"score":0.4908512234687805},{"id":"https://openalex.org/C519248777","wikidata":"https://www.wikidata.org/wiki/Q160122","display_name":"Influenza A virus subtype H5N1","level":3,"score":0.4375693202018738},{"id":"https://openalex.org/C2777546802","wikidata":"https://www.wikidata.org/wiki/Q834390","display_name":"Influenza A virus","level":3,"score":0.4351400136947632},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3211994171142578},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.2533183693885803},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.23711761832237244},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.176338791847229},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1689172089099884},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16255509853363037},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.1026984453201294},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.09978291392326355},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3121138.3121166","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3121138.3121166","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 6th International Conference on Bioinformatics and Biomedical Science","raw_type":"proceedings-article"},{"id":"pmh:oai:dr.ntu.edu.sg:10356/102511","is_oa":true,"landing_page_url":"http://hdl.handle.net/10220/49803","pdf_url":"https://dr.ntu.edu.sg/bitstream/10356/102511/1/ICBBS_2017%28final%29_S0009.pdf","source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference Paper"}],"best_oa_location":{"id":"pmh:oai:dr.ntu.edu.sg:10356/102511","is_oa":true,"landing_page_url":"http://hdl.handle.net/10220/49803","pdf_url":"https://dr.ntu.edu.sg/bitstream/10356/102511/1/ICBBS_2017%28final%29_S0009.pdf","source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference Paper"},"sustainable_development_goals":[{"score":0.8700000047683716,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2342870495","display_name":null,"funder_award_id":"AcRF\u2010Tier2","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"},{"id":"https://openalex.org/G4761891711","display_name":null,"funder_award_id":"MOE2014-T2-2-023","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"},{"id":"https://openalex.org/G6854926366","display_name":null,"funder_award_id":"Tier 2","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"}],"funders":[{"id":"https://openalex.org/F4320320751","display_name":"Ministry of Education - Singapore","ror":"https://ror.org/01kcva023"},{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2757165800.pdf","grobid_xml":"https://content.openalex.org/works/W2757165800.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1981950460","https://openalex.org/W1987052743","https://openalex.org/W2009718765","https://openalex.org/W2021655241","https://openalex.org/W2022439632","https://openalex.org/W2032378111","https://openalex.org/W2043823245","https://openalex.org/W2057637629","https://openalex.org/W2071644795","https://openalex.org/W2082036062","https://openalex.org/W2094201044","https://openalex.org/W2104568825","https://openalex.org/W2112619130","https://openalex.org/W2121593344","https://openalex.org/W2131432601","https://openalex.org/W2133990480","https://openalex.org/W2150811397","https://openalex.org/W2153037310","https://openalex.org/W2158112812","https://openalex.org/W2158886341","https://openalex.org/W2179118268","https://openalex.org/W2266724186","https://openalex.org/W2363107904","https://openalex.org/W2560627889"],"related_works":["https://openalex.org/W1992259303","https://openalex.org/W1530374505","https://openalex.org/W2412352049","https://openalex.org/W1812546072","https://openalex.org/W2124103225","https://openalex.org/W4322758331","https://openalex.org/W4391064179","https://openalex.org/W1556716938","https://openalex.org/W3030201000","https://openalex.org/W2013097789"],"abstract_inverted_index":{"The":[0,115,184],"influenza":[1,14,84,172],"pandemics":[2],"have":[3],"caused":[4],"millions":[5],"of":[6,42,50,82,110,122,137,171,187],"deaths":[7],"and":[8,20,73,88,104,126],"enormous":[9],"economic":[10],"loss.":[11],"Current":[12],"circulating":[13],"viruses":[15,173],"in":[16,35,120,145,162,180,190],"human,":[17],"avian,":[18],"swine":[19],"other":[21],"animals":[22],"are":[23,99,148,165],"potential":[24,111,140,186],"to":[25,46,106,167,175,194],"evolve":[26],"into":[27,70,86],"novel":[28,68],"strains":[29,44,85],"that":[30],"may":[31],"cause":[32,176],"another":[33],"pandemic":[34,43,87,185],"the":[36,40,48,138,169,181],"future.":[37],"Hence,":[38],"recognizing":[39],"determinants":[41],"helps":[45],"raise":[47],"alarm":[49],"future":[51],"pandemics.":[52],"With":[53],"increasingly":[54],"huge":[55],"biological":[56],"data,":[57,66],"computational":[58],"modeling":[59],"is":[60],"a":[61,78],"good":[62,118],"technique":[63],"for":[64,133],"analyzing":[65],"providing":[67],"insight":[69],"significant":[71],"patterns":[72],"rules.":[74],"Here":[75],"we":[76],"define":[77],"binary":[79],"classification":[80],"problem":[81],"categorizing":[83],"non-pandemic":[89],"classes":[90],"based":[91],"on":[92,131],"amino":[93],"acid":[94],"sequences.":[95],"Three":[96],"rule-based":[97],"algorithms":[98],"applied,":[100],"namely":[101],"OneR,":[102],"JRip":[103],"PART,":[105],"extract":[107],"rules,":[108],"composed":[109],"critical":[112,141],"virulent":[113,142],"sites.":[114,156],"results":[116],"present":[117],"performance":[119],"term":[121],"accuracy,":[123],"specificity,":[124],"sensitivity":[125],"F-measure":[127],"(more":[128],"than":[129],"0.9":[130],"average":[132],"each).":[134],"Fourteen":[135],"out":[136],"sixteen":[139],"sites":[143,153,164,189],"detected":[144],"our":[146,191],"experiments":[147],"overlapped":[149],"with":[150],"receptor":[151],"binding":[152],"or":[154,174],"antigenic":[155],"In":[157],"addition,":[158],"some":[159],"variations":[160],"occurred":[161],"these":[163],"known":[166],"affect":[168],"pathogenicity":[170],"more":[177],"severe":[178],"symptom":[179],"infected":[182],"patients.":[183],"uncovered":[188],"study":[192],"needs":[193],"be":[195],"further":[196],"experimentally":[197],"validated.":[198]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-23T07:36:19.812096","created_date":"2025-10-10T00:00:00"}
