{"id":"https://openalex.org/W2746783505","doi":"https://doi.org/10.1145/3107411.3108231","title":"SeqAnt","display_name":"SeqAnt","publication_year":2017,"publication_date":"2017-08-20","ids":{"openalex":"https://openalex.org/W2746783505","doi":"https://doi.org/10.1145/3107411.3108231","mag":"2746783505"},"language":"en","primary_location":{"id":"doi:10.1145/3107411.3108231","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3108231","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069892731","display_name":"Alex Kotlar","orcid":"https://orcid.org/0000-0002-1578-6849"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex V. Kotlar","raw_affiliation_strings":["Emory University School of Medicine, Atlanta, GA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emory University School of Medicine, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002709592","display_name":"Cristina Trevino","orcid":null},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cristina E. Trevino","raw_affiliation_strings":["Emory University School of Medicine, Atlanta, GA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emory University School of Medicine, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011516354","display_name":"Michael E. Zwick","orcid":"https://orcid.org/0000-0001-9772-8257"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael E. Zwick","raw_affiliation_strings":["Emory University School of Medicine, Atlanta, GA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emory University School of Medicine, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006598488","display_name":"David J. Cutler","orcid":"https://orcid.org/0000-0001-6394-6731"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David J. Cutler","raw_affiliation_strings":["Emory University School of Medicine, Atlanta, GA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Emory University School of Medicine, Atlanta, GA, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103132708","display_name":"Thomas S. Wingo","orcid":"https://orcid.org/0000-0002-7679-6282"},"institutions":[{"id":"https://openalex.org/I4210152539","display_name":"Atlanta VA Medical Center","ror":"https://ror.org/04z89xx32","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210131075","https://openalex.org/I4210149289","https://openalex.org/I4210152539"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas S. Wingo","raw_affiliation_strings":["Atlanta VA Medical Center, Decatur, GA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Atlanta VA Medical Center, Decatur, GA, USA","institution_ids":["https://openalex.org/I4210152539"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2243,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.56596759,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"621","last_page":"621"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7240253686904907},{"id":"https://openalex.org/keywords/terabyte","display_name":"Terabyte","score":0.7013332843780518},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4646992087364197},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4513801336288452},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.32870787382125854},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21640735864639282},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20092931389808655},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1008419394493103},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09368893504142761}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7240253686904907},{"id":"https://openalex.org/C199683683","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Terabyte","level":2,"score":0.7013332843780518},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4646992087364197},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4513801336288452},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.32870787382125854},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21640735864639282},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20092931389808655},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1008419394493103},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09368893504142761},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3107411.3108231","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3108231","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1925625520","display_name":null,"funder_award_id":"AG025688","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G30441596","display_name":null,"funder_award_id":"1008188","funder_id":"https://openalex.org/F4320306133","funder_display_name":"Burroughs Wellcome Fund"}],"funders":[{"id":"https://openalex.org/F4320306133","display_name":"Burroughs Wellcome Fund","ror":"https://ror.org/01d35cw23"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":2,"referenced_works":["https://openalex.org/W2225287204","https://openalex.org/W2417483443"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2066858118","https://openalex.org/W3011699130","https://openalex.org/W2134017072","https://openalex.org/W1976914335","https://openalex.org/W2915208987","https://openalex.org/W2152256925","https://openalex.org/W1940452713","https://openalex.org/W2005567565"],"abstract_inverted_index":{"Describing,":[0],"prioritizing,":[1],"and":[2,46,82,98],"selecting":[3],"alleles":[4,40,61,93],"from":[5],"large":[6],"sequencing":[7],"experiments":[8,30],"remains":[9],"technically":[10],"challenging.":[11],"SeqAnt":[12,74],"(https://seqant.emory.edu)":[13],"is":[14],"the":[15,39,49],"first":[16],"online,":[17],"cloud-based":[18],"application":[19],"that":[20,73,83],"makes":[21],"these":[22],"tasks":[23],"accessible":[24],"for":[25,28],"non-programmers,":[26],"even":[27],"terabyte-sized":[29],"containing":[31],"thousands":[32],"of":[33,62,80],"whole-genome":[34],"samples.":[35],"It":[36],"rapidly":[37],"describes":[38],"found":[41],"within":[42],"submitted":[43],"VCF":[44],"files,":[45],"then":[47],"indexes":[48],"results":[50,71],"in":[51,64],"a":[52],"natural-language":[53],"search":[54,85],"engine,":[55],"which":[56],"enables":[57],"users":[58],"to":[59,90],"locate":[60],"interest":[63],"milliseconds":[65],"using":[66],"normal":[67],"English":[68],"phrases.":[69],"Our":[70],"show":[72],"decreases":[75],"processing":[76],"time":[77],"by":[78,94],"orders":[79],"magnitude":[81],"its":[84],"engine":[86],"can":[87],"be":[88],"used":[89],"precisely":[91],"identify":[92],"phenotype,":[95],"genomic":[96],"structure,":[97],"population":[99],"genetics":[100],"characteristics.":[101]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2017-08-31T00:00:00"}
