{"id":"https://openalex.org/W2745809388","doi":"https://doi.org/10.1145/3107411.3108228","title":"Breaking Ties in Weighted Interactomes","display_name":"Breaking Ties in Weighted Interactomes","publication_year":2017,"publication_date":"2017-08-20","ids":{"openalex":"https://openalex.org/W2745809388","doi":"https://doi.org/10.1145/3107411.3108228","mag":"2745809388"},"language":"en","primary_location":{"id":"doi:10.1145/3107411.3108228","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3107411.3108228","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3107411.3108228","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3107411.3108228","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084694975","display_name":"Ibrahim Youssef","orcid":"https://orcid.org/0000-0002-0270-1703"},"institutions":[{"id":"https://openalex.org/I55486353","display_name":"Reed College","ror":"https://ror.org/00a6ram87","country_code":"US","type":"education","lineage":["https://openalex.org/I55486353"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ibrahim Youssef","raw_affiliation_strings":["Reed College &amp; Cairo University, Portland, OR, USA"],"affiliations":[{"raw_affiliation_string":"Reed College &amp; Cairo University, Portland, OR, USA","institution_ids":["https://openalex.org/I55486353"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087718701","display_name":"Anna Ritz","orcid":"https://orcid.org/0000-0002-7925-5369"},"institutions":[{"id":"https://openalex.org/I55486353","display_name":"Reed College","ror":"https://ror.org/00a6ram87","country_code":"US","type":"education","lineage":["https://openalex.org/I55486353"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna Ritz","raw_affiliation_strings":["Reed College, Portland, OR, USA"],"affiliations":[{"raw_affiliation_string":"Reed College, Portland, OR, USA","institution_ids":["https://openalex.org/I55486353"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5084694975"],"corresponding_institution_ids":["https://openalex.org/I55486353"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08656767,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"618","last_page":"618"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9836999773979187,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6147556900978088},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5426079034805298},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3355959951877594}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6147556900978088},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5426079034805298},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3355959951877594}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3107411.3108228","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3107411.3108228","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3107411.3108228","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3107411.3108228","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3107411.3108228","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3107411.3108228","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1618796215","display_name":null,"funder_award_id":"2015288","funder_id":"https://openalex.org/F4320306203","funder_display_name":"M.J. Murdock Charitable Trust"},{"id":"https://openalex.org/G4326730746","display_name":null,"funder_award_id":"1643361","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306203","display_name":"M.J. Murdock Charitable Trust","ror":"https://ror.org/02hxgd925"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2745809388.pdf","grobid_xml":"https://content.openalex.org/works/W2745809388.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2171599819","https://openalex.org/W2262414037","https://openalex.org/W2317662115","https://openalex.org/W2321016022","https://openalex.org/W2534390616"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191"],"abstract_inverted_index":{"Automatic":[0],"signaling":[1,64],"pathway":[2,35,54,65],"reconstruction":[3,66],"methods":[4],"using":[5],"protein-protein":[6],"interactomes":[7],"are":[8],"hindered":[9],"by":[10],"the":[11,20,34,49],"unit/coarsely-weighted":[12],"edges":[13],"that":[14,68],"lead":[15],"to":[16,25,38,62],"many":[17],"paths":[18,46],"sharing":[19],"same":[21],"cost.":[22],"We":[23],"propose":[24],"use":[26],"gene":[27],"expression":[28],"as":[29],"an":[30,70],"orthologous":[31],"dataset":[32],"from":[33],"of":[36,51,73],"interest":[37],"re-prioritize":[39],"tied":[40],"paths.":[41],"The":[42],"proposed":[43],"method":[44,67],"promotes/demotes":[45],"based":[47],"on":[48],"number":[50],"inferred":[52],"true":[53],"edges.":[55],"In":[56],"general,":[57],"it":[58],"can":[59],"be":[60],"applied":[61],"any":[63],"outputs":[69],"ordered":[71],"list":[72],"paths,":[74],"trees,":[75],"or":[76],"other":[77],"subgraphs.":[78]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
