{"id":"https://openalex.org/W2750291152","doi":"https://doi.org/10.1145/3107411.3108213","title":"NGSPipes","display_name":"NGSPipes","publication_year":2017,"publication_date":"2017-08-20","ids":{"openalex":"https://openalex.org/W2750291152","doi":"https://doi.org/10.1145/3107411.3108213","mag":"2750291152"},"language":"en","primary_location":{"id":"doi:10.1145/3107411.3108213","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3108213","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087221324","display_name":"Bruno Dantas","orcid":null},"institutions":[{"id":"https://openalex.org/I203847022","display_name":"Instituto Polit\u00e9cnico de Lisboa","ror":"https://ror.org/04ea70f07","country_code":"PT","type":"education","lineage":["https://openalex.org/I203847022"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Bruno Dantas","raw_affiliation_strings":["Polythenic Institute of Lisbon, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Polythenic Institute of Lisbon, Lisboa, Portugal","institution_ids":["https://openalex.org/I203847022"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009022721","display_name":"Calmenelias Fleitas","orcid":null},"institutions":[{"id":"https://openalex.org/I203847022","display_name":"Instituto Polit\u00e9cnico de Lisboa","ror":"https://ror.org/04ea70f07","country_code":"PT","type":"education","lineage":["https://openalex.org/I203847022"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Calmenelias Fleitas","raw_affiliation_strings":["Polythenic Institute of Lisbon, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Polythenic Institute of Lisbon, Lisboa, Portugal","institution_ids":["https://openalex.org/I203847022"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004883694","display_name":"Alexandre Almeida","orcid":"https://orcid.org/0000-0002-4813-6164"},"institutions":[{"id":"https://openalex.org/I203847022","display_name":"Instituto Polit\u00e9cnico de Lisboa","ror":"https://ror.org/04ea70f07","country_code":"PT","type":"education","lineage":["https://openalex.org/I203847022"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Alexandre Almeida","raw_affiliation_strings":["Polythenic Institute of Lisbon, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Polythenic Institute of Lisbon, Lisboa, Portugal","institution_ids":["https://openalex.org/I203847022"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028158686","display_name":"Jo\u00e3o Forja","orcid":null},"institutions":[{"id":"https://openalex.org/I203847022","display_name":"Instituto Polit\u00e9cnico de Lisboa","ror":"https://ror.org/04ea70f07","country_code":"PT","type":"education","lineage":["https://openalex.org/I203847022"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jo\u00e3o Forja","raw_affiliation_strings":["Polythenic Institute of Lisbon, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Polythenic Institute of Lisbon, Lisboa, Portugal","institution_ids":["https://openalex.org/I203847022"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110540557","display_name":"Alexandre P. Francisco","orcid":"https://orcid.org/0000-0003-4852-1641"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Alexandre P. Francisco","raw_affiliation_strings":["University of Lisbon, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"University of Lisbon, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022806503","display_name":"Jos\u00e9 Sim\u00e3o","orcid":"https://orcid.org/0000-0002-6564-593X"},"institutions":[{"id":"https://openalex.org/I203847022","display_name":"Instituto Polit\u00e9cnico de Lisboa","ror":"https://ror.org/04ea70f07","country_code":"PT","type":"education","lineage":["https://openalex.org/I203847022"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Sim\u00e3o","raw_affiliation_strings":["Polythenic Institute of Lisbon, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Polythenic Institute of Lisbon, Lisboa, Portugal","institution_ids":["https://openalex.org/I203847022"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041077284","display_name":"C\u00e1tia Vaz","orcid":"https://orcid.org/0000-0001-6074-3074"},"institutions":[{"id":"https://openalex.org/I203847022","display_name":"Instituto Polit\u00e9cnico de Lisboa","ror":"https://ror.org/04ea70f07","country_code":"PT","type":"education","lineage":["https://openalex.org/I203847022"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"C\u00e1tia Vaz","raw_affiliation_strings":["Polythenic Institute of Lisbon, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Polythenic Institute of Lisbon, Lisboa, Portugal","institution_ids":["https://openalex.org/I203847022"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5087221324"],"corresponding_institution_ids":["https://openalex.org/I203847022"],"apc_list":null,"apc_paid":null,"fwci":0.6324,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.81580268,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"603","last_page":"603"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7127543687820435},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.6769436597824097},{"id":"https://openalex.org/keywords/workstation","display_name":"Workstation","score":0.6695291996002197},{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.5361383557319641},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5244272351264954},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.40938612818717957},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.19066059589385986},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11087894439697266}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7127543687820435},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6769436597824097},{"id":"https://openalex.org/C67953723","wikidata":"https://www.wikidata.org/wiki/Q192525","display_name":"Workstation","level":2,"score":0.6695291996002197},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.5361383557319641},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5244272351264954},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.40938612818717957},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.19066059589385986},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11087894439697266},{"id":"https://openalex.org/C87717796","wikidata":"https://www.wikidata.org/wiki/Q146326","display_name":"Environmental engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3107411.3108213","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3108213","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5799999833106995,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G5658732297","display_name":null,"funder_award_id":"TUBITACK/0004/2014","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2310259903","https://openalex.org/W2578188453","https://openalex.org/W6697974936"],"related_works":["https://openalex.org/W2045348955","https://openalex.org/W2352028719","https://openalex.org/W2584886384","https://openalex.org/W2378667902","https://openalex.org/W2052769075","https://openalex.org/W2791088446","https://openalex.org/W4206808270","https://openalex.org/W2166936983","https://openalex.org/W1999130367","https://openalex.org/W88892441"],"abstract_inverted_index":{"Biosciences":[0],"have":[1],"been":[2],"revolutionised":[3],"by":[4],"NGS":[5],"technologies":[6],"in":[7,14,65,96],"last":[8],"years,":[9],"leading":[10],"to":[11,41,84],"new":[12,47],"perspectives":[13],"medical,":[15],"industrial":[16],"and":[17,49,55,69,87],"environmental":[18],"applications.":[19],"And":[20],"although":[21],"our":[22],"motivation":[23],"comes":[24],"from":[25,74],"biosciences,":[26],"the":[27,44,81,97],"following":[28],"is":[29,72,101],"true":[30],"for":[31,61],"many":[32],"areas":[33],"of":[34,46],"science:":[35],"published":[36],"results":[37],"are":[38,57,64],"usually":[39],"hard":[40],"reproduce,":[42],"delaying":[43],"adoption":[45],"methodologies":[48],"hindering":[50],"innovation.":[51],"Even":[52],"if":[53],"data":[54,62],"tools":[56],"freely":[58,102],"available,":[59],"pipelines":[60],"analysis":[63],"general":[66],"barely":[67],"described":[68],"their":[70],"setup":[71],"far":[73],"trivial.":[75],"NGSPipes":[76,99],"addresses":[77],"these":[78],"issues":[79],"reducing":[80],"efforts":[82],"necessary":[83],"define,":[85],"build":[86],"deploy":[88],"pipelines,":[89],"either":[90],"at":[91,104],"a":[92],"local":[93],"workstation":[94],"or":[95],"cloud.":[98],"framework":[100],"available":[103],"http://ngspipes.github.io/.":[105]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2017-08-31T00:00:00"}
