{"id":"https://openalex.org/W2748440810","doi":"https://doi.org/10.1145/3107411.3108199","title":"Bias and Noise Cancellation for Robust Copy Number Variation Detection","display_name":"Bias and Noise Cancellation for Robust Copy Number Variation Detection","publication_year":2017,"publication_date":"2017-08-20","ids":{"openalex":"https://openalex.org/W2748440810","doi":"https://doi.org/10.1145/3107411.3108199","mag":"2748440810"},"language":"en","primary_location":{"id":"doi:10.1145/3107411.3108199","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3108199","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075494433","display_name":"Fatima Zare","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Fatima Zare","raw_affiliation_strings":["University of Connecticut, Storrs, CT, USA"],"affiliations":[{"raw_affiliation_string":"University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030205118","display_name":"Sardar Ansari","orcid":"https://orcid.org/0000-0002-3471-316X"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sardar Ansari","raw_affiliation_strings":["University of Michigan, Ann Arbor, MI, USA"],"affiliations":[{"raw_affiliation_string":"University of Michigan, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067697464","display_name":"Kayvan Najarian","orcid":"https://orcid.org/0000-0003-4485-6612"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kayvan Najarian","raw_affiliation_strings":["university of Michigan, Ann Arbor, MI, USA"],"affiliations":[{"raw_affiliation_string":"university of Michigan, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010254642","display_name":"Sheida Nabavi","orcid":"https://orcid.org/0000-0002-5996-1020"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sheida Nabavi","raw_affiliation_strings":["University of Connecticut, Storrs, CT, USA"],"affiliations":[{"raw_affiliation_string":"University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5075494433"],"corresponding_institution_ids":["https://openalex.org/I140172145"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10480842,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"591","last_page":"591"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.71159827709198},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7085614204406738},{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.6459526419639587},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6442917585372925},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.5903380513191223},{"id":"https://openalex.org/keywords/smoothing","display_name":"Smoothing","score":0.5556918978691101},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3399457335472107},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23180776834487915},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.15392884612083435},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10276338458061218},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09887835383415222},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08436894416809082}],"concepts":[{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.71159827709198},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7085614204406738},{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.6459526419639587},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6442917585372925},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.5903380513191223},{"id":"https://openalex.org/C3770464","wikidata":"https://www.wikidata.org/wiki/Q775963","display_name":"Smoothing","level":2,"score":0.5556918978691101},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3399457335472107},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23180776834487915},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.15392884612083435},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10276338458061218},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09887835383415222},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08436894416809082},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3107411.3108199","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3108199","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5446092251","display_name":null,"funder_award_id":"R00LM011595","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2133174470","https://openalex.org/W2162894628","https://openalex.org/W2410423566"],"related_works":["https://openalex.org/W1978572805","https://openalex.org/W2383807498","https://openalex.org/W1997992934","https://openalex.org/W1987225439","https://openalex.org/W4238188170","https://openalex.org/W2513883126","https://openalex.org/W3118014344","https://openalex.org/W2160911017","https://openalex.org/W2125114371","https://openalex.org/W2977327189"],"abstract_inverted_index":{"High-throughput":[0],"next":[1],"generation":[2],"sequencing":[3,43],"(NGS)":[4],"technologies":[5],"have":[6],"created":[7],"an":[8,67],"opportunity":[9],"for":[10],"detecting":[11],"copy":[12],"number":[13],"variations":[14],"(CNVs)":[15],"more":[16],"accurately.":[17],"In":[18],"this":[19],"work,":[20],"we":[21],"introduce":[22],"a":[23],"novel":[24],"preprocessing":[25],"pipeline":[26],"to":[27,49,53,72],"improve":[28],"the":[29,62],"detection":[30],"accuracy":[31],"of":[32],"CNVs":[33],"in":[34],"heterogeneous":[35],"NGS":[36],"data":[37],"such":[38],"as":[39,66],"cancer":[40],"whole":[41],"exome":[42],"data.":[44],"We":[45],"employ":[46],"several":[47],"normalizations":[48],"reduce":[50,73],"biases":[51],"due":[52],"GC":[54],"contents,":[55],"mappability":[56],"and":[57],"tumor":[58],"contamination.We":[59],"also":[60],"utilize":[61],"Taut":[63],"String":[64],"method":[65],"efficient":[68],"effective":[69],"smoothing":[70],"approach":[71],"noise.":[74]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
