{"id":"https://openalex.org/W2745979319","doi":"https://doi.org/10.1145/3107411.3107505","title":"Geometry Analysis for Protein Secondary Structures Matching Problem","display_name":"Geometry Analysis for Protein Secondary Structures Matching Problem","publication_year":2017,"publication_date":"2017-08-20","ids":{"openalex":"https://openalex.org/W2745979319","doi":"https://doi.org/10.1145/3107411.3107505","mag":"2745979319"},"language":"en","primary_location":{"id":"doi:10.1145/3107411.3107505","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107505","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005997198","display_name":"Kamal Al Nasr","orcid":"https://orcid.org/0000-0001-8459-9070"},"institutions":[{"id":"https://openalex.org/I75256744","display_name":"Tennessee State University","ror":"https://ror.org/01fpczx89","country_code":"US","type":"education","lineage":["https://openalex.org/I75256744"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kamal Al Nasr","raw_affiliation_strings":["Tennessee State University, Nashville, TN, USA"],"affiliations":[{"raw_affiliation_string":"Tennessee State University, Nashville, TN, USA","institution_ids":["https://openalex.org/I75256744"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031062201","display_name":"Feras Yousef","orcid":"https://orcid.org/0000-0003-2740-7081"},"institutions":[{"id":"https://openalex.org/I114972647","display_name":"University of Jordan","ror":"https://ror.org/05k89ew48","country_code":"JO","type":"education","lineage":["https://openalex.org/I114972647"]}],"countries":["JO"],"is_corresponding":false,"raw_author_name":"Feras Yousef","raw_affiliation_strings":["University of Jordan, Amman, Jordan"],"affiliations":[{"raw_affiliation_string":"University of Jordan, Amman, Jordan","institution_ids":["https://openalex.org/I114972647"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031640938","display_name":"Chris S. Jones","orcid":"https://orcid.org/0000-0001-9096-9728"},"institutions":[{"id":"https://openalex.org/I75256744","display_name":"Tennessee State University","ror":"https://ror.org/01fpczx89","country_code":"US","type":"education","lineage":["https://openalex.org/I75256744"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Jones","raw_affiliation_strings":["Tennessee State University, Nashville, TN, USA"],"affiliations":[{"raw_affiliation_string":"Tennessee State University, Nashville, TN, USA","institution_ids":["https://openalex.org/I75256744"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086941774","display_name":"Ruba Jebril","orcid":null},"institutions":[{"id":"https://openalex.org/I75256744","display_name":"Tennessee State University","ror":"https://ror.org/01fpczx89","country_code":"US","type":"education","lineage":["https://openalex.org/I75256744"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruba Jebril","raw_affiliation_strings":["Tennessee State University, Nashville, TN, USA"],"affiliations":[{"raw_affiliation_string":"Tennessee State University, Nashville, TN, USA","institution_ids":["https://openalex.org/I75256744"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5005997198"],"corresponding_institution_ids":["https://openalex.org/I75256744"],"apc_list":null,"apc_paid":null,"fwci":0.1063,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.48271864,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"716","last_page":"721"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6650053262710571},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.5959234237670898},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5384983420372009},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5252846479415894},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.511522650718689},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4948508143424988},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.47588837146759033},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.42704036831855774},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.41391271352767944},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27229052782058716},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18763557076454163},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.18285390734672546},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11628684401512146}],"concepts":[{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6650053262710571},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.5959234237670898},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5384983420372009},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5252846479415894},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.511522650718689},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4948508143424988},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.47588837146759033},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.42704036831855774},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.41391271352767944},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27229052782058716},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18763557076454163},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.18285390734672546},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11628684401512146},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3107411.3107505","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107505","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6931707172","display_name":null,"funder_award_id":"1600919","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W77111903","https://openalex.org/W117085007","https://openalex.org/W253094825","https://openalex.org/W1530286200","https://openalex.org/W1879205842","https://openalex.org/W1956663338","https://openalex.org/W1963844724","https://openalex.org/W1979147675","https://openalex.org/W1981264193","https://openalex.org/W1985145180","https://openalex.org/W1994086483","https://openalex.org/W1995043996","https://openalex.org/W1999141286","https://openalex.org/W2005752630","https://openalex.org/W2037373017","https://openalex.org/W2046192291","https://openalex.org/W2048875539","https://openalex.org/W2053880783","https://openalex.org/W2071757918","https://openalex.org/W2080333910","https://openalex.org/W2096667528","https://openalex.org/W2096732301","https://openalex.org/W2111741784","https://openalex.org/W2115167726","https://openalex.org/W2117264607","https://openalex.org/W2132629607","https://openalex.org/W2133105505","https://openalex.org/W2136581962","https://openalex.org/W2141049683","https://openalex.org/W2145991251","https://openalex.org/W2147791333","https://openalex.org/W2152086886","https://openalex.org/W2153153865","https://openalex.org/W2153187042","https://openalex.org/W2154106236","https://openalex.org/W2168874856"],"related_works":["https://openalex.org/W2078778136","https://openalex.org/W2933325505","https://openalex.org/W2020577335","https://openalex.org/W2117934800","https://openalex.org/W2386796734","https://openalex.org/W2943461603","https://openalex.org/W3210429500","https://openalex.org/W3217252310","https://openalex.org/W4286894112","https://openalex.org/W2021626172"],"abstract_inverted_index":{"De":[0],"novo":[1,50],"modeling":[2],"is":[3,22,42],"a":[4,24,90,96,114],"promising":[5],"computational":[6],"approach":[7],"to":[8,29,70,78,100],"model":[9],"the":[10,31,34,52,58,118],"structure":[11,40,67],"of":[12,33,92,105,120],"proteins":[13,107],"using":[14],"Cryo-Electron":[15],"Microscopy":[16],"data.":[17],"Not":[18],"all":[19],"data":[20],"produced":[21],"within":[23],"resolution":[25],"that":[26,63,94,109],"enables":[27],"us":[28],"visualize":[30],"atomic-structure":[32],"molecule.":[35],"However,":[36],"information":[37],"like":[38],"secondary":[39,66],"locations":[41,56],"detectable.":[43],"At":[44],"an":[45],"intermediate":[46],"step":[47],"in":[48],"de":[49],"modeling,":[51],"matching":[53,81],"between":[54],"these":[55,65],"and":[57],"amino":[59],"acid":[60],"sequence":[61],"segments":[62],"underlie":[64],"elements":[68],"needs":[69],"be":[71],"addressed.":[72],"Many":[73],"tools":[74],"have":[75],"been":[76],"developed":[77],"address":[79],"this":[80,86],"problem":[82],"including":[83],"DP-TOSS.":[84,121],"In":[85],"paper,":[87],"we":[88],"propose":[89],"recast":[91],"DP-TOSS":[93],"incorporates":[95],"geometry-based":[97],"analytical":[98,111],"function":[99,112],"improve":[101],"accuracy.":[102],"A":[103],"test":[104],"15":[106],"shows":[108],"our":[110],"has":[113],"positive":[115],"impact":[116],"on":[117],"accuracy":[119]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}