{"id":"https://openalex.org/W2619108075","doi":"https://doi.org/10.1145/3107411.3107481","title":"Building Applications for Interactive Data Exploration in Systems Biology","display_name":"Building Applications for Interactive Data Exploration in Systems Biology","publication_year":2017,"publication_date":"2017-08-20","ids":{"openalex":"https://openalex.org/W2619108075","doi":"https://doi.org/10.1145/3107411.3107481","mag":"2619108075"},"language":"en","primary_location":{"id":"doi:10.1145/3107411.3107481","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107481","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047783097","display_name":"Bj\u00f8rn Fjukstad","orcid":"https://orcid.org/0000-0001-8024-5881"},"institutions":[{"id":"https://openalex.org/I78037679","display_name":"UiT The Arctic University of Norway","ror":"https://ror.org/00wge5k78","country_code":"NO","type":"education","lineage":["https://openalex.org/I78037679"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Bj\u00f8rn Fjukstad","raw_affiliation_strings":["UiT The Arctic University of Norway, Troms\u00f8, Norway"],"affiliations":[{"raw_affiliation_string":"UiT The Arctic University of Norway, Troms\u00f8, Norway","institution_ids":["https://openalex.org/I78037679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067257359","display_name":"Vanessa Dumeaux","orcid":"https://orcid.org/0000-0002-1280-6541"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Vanessa Dumeaux","raw_affiliation_strings":["Concordia University, Montreal, Canada"],"affiliations":[{"raw_affiliation_string":"Concordia University, Montreal, Canada","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071881336","display_name":"Karina Standahl Olsen","orcid":"https://orcid.org/0000-0002-2539-4603"},"institutions":[{"id":"https://openalex.org/I78037679","display_name":"UiT The Arctic University of Norway","ror":"https://ror.org/00wge5k78","country_code":"NO","type":"education","lineage":["https://openalex.org/I78037679"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Karina Standahl Olsen","raw_affiliation_strings":["UiT The Arctic University of Norway, Troms\u00f8, Norway"],"affiliations":[{"raw_affiliation_string":"UiT The Arctic University of Norway, Troms\u00f8, Norway","institution_ids":["https://openalex.org/I78037679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067509213","display_name":"Eiliv Lund","orcid":"https://orcid.org/0000-0002-8071-8711"},"institutions":[{"id":"https://openalex.org/I78037679","display_name":"UiT The Arctic University of Norway","ror":"https://ror.org/00wge5k78","country_code":"NO","type":"education","lineage":["https://openalex.org/I78037679"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Eiliv Lund","raw_affiliation_strings":["UiT The Arctic University of Norway, Troms\u00f8, Norway"],"affiliations":[{"raw_affiliation_string":"UiT The Arctic University of Norway, Troms\u00f8, Norway","institution_ids":["https://openalex.org/I78037679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059804416","display_name":"Michael Hallett","orcid":"https://orcid.org/0000-0001-6738-6786"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Michael Hallett","raw_affiliation_strings":["Concordia University, Montreal, Canada"],"affiliations":[{"raw_affiliation_string":"Concordia University, Montreal, Canada","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013607592","display_name":"Lars Ailo Bongo","orcid":"https://orcid.org/0000-0002-7544-2482"},"institutions":[{"id":"https://openalex.org/I78037679","display_name":"UiT The Arctic University of Norway","ror":"https://ror.org/00wge5k78","country_code":"NO","type":"education","lineage":["https://openalex.org/I78037679"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Lars Ailo Bongo","raw_affiliation_strings":["UiT The Arctic University of Norway, Troms\u00f8, Norway"],"affiliations":[{"raw_affiliation_string":"UiT The Arctic University of Norway, Troms\u00f8, Norway","institution_ids":["https://openalex.org/I78037679"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5047783097"],"corresponding_institution_ids":["https://openalex.org/I78037679"],"apc_list":null,"apc_paid":null,"fwci":0.1123,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.50056873,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"556","last_page":"561"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8053805828094482},{"id":"https://openalex.org/keywords/container","display_name":"Container (type theory)","score":0.5998688340187073},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.550103485584259},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.5253623723983765},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5159593224525452},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4712299108505249},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.46874764561653137},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.45586705207824707},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4534294307231903},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.37249159812927246},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3528689742088318},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3428037464618683},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.19464990496635437},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10792332887649536}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8053805828094482},{"id":"https://openalex.org/C2781018962","wikidata":"https://www.wikidata.org/wiki/Q5164884","display_name":"Container (type theory)","level":2,"score":0.5998688340187073},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.550103485584259},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.5253623723983765},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5159593224525452},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4712299108505249},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.46874764561653137},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.45586705207824707},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4534294307231903},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.37249159812927246},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3528689742088318},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3428037464618683},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.19464990496635437},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10792332887649536},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3107411.3107481","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107481","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1554483893","display_name":null,"funder_award_id":"INNOV2-2014-702940","funder_id":"https://openalex.org/F4320334576","funder_display_name":"Canadian Cancer Society Research Institute"},{"id":"https://openalex.org/G845832005","display_name":null,"funder_award_id":"ERC-AdG 232997 TICE","funder_id":"https://openalex.org/F4320334678","funder_display_name":"European Research Council"}],"funders":[{"id":"https://openalex.org/F4320334576","display_name":"Canadian Cancer Society Research Institute","ror":"https://ror.org/017343w90"},{"id":"https://openalex.org/F4320334678","display_name":"European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W2114634342","https://openalex.org/W2114850508","https://openalex.org/W2121015328","https://openalex.org/W2136621097","https://openalex.org/W2759360515","https://openalex.org/W4235925858"],"related_works":["https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2579659702","https://openalex.org/W2154046714","https://openalex.org/W1965329638","https://openalex.org/W2189613078","https://openalex.org/W2923661510","https://openalex.org/W1574055964","https://openalex.org/W2542318691","https://openalex.org/W3160708108"],"abstract_inverted_index":{"The":[0,181],"significant":[1],"increase":[2],"in":[3,84,120,133,177],"the":[4,10,23,64,68,89,128,154],"rate":[5],"of":[6,67,141,156],"data":[7,69,81,194],"generation":[8],"by":[9,123],"systems":[11,85],"biology":[12,86],"community":[13],"creates":[14],"a":[15,52,134,160],"need":[16,28],"for":[17,79,113,166],"interactive":[18,40],"exploration":[19,82],"tools":[20,27,83,118],"to":[21,29],"explore":[22],"resultant":[24],"datasets.":[25],"Such":[26],"combine":[30],"advanced":[31,184],"statistical":[32,185],"analyses,":[33],"prior":[34],"knowledge":[35],"from":[36,172,189],"biological":[37,190],"databases,":[38,191],"and":[39,56,75,139,149,168,174,192],"visualizations":[41],"with":[42],"intuitive":[43],"user":[44,54],"interfaces.":[45],"Each":[46],"specific":[47],"research":[48,125],"question":[49],"potentially":[50],"requires":[51],"specialized":[53],"interface":[55],"visualization":[57,195],"methods.":[58],"Although":[59],"some":[60],"features":[61],"are":[62],"application-specific,":[63],"underlying":[65],"components":[66,98,143],"analysis":[70],"tool":[71],"can":[72,100],"be":[73],"shared":[74],"reused.":[76],"Our":[77],"approach":[78,158],"developing":[80],"builds":[87],"on":[88],"microservice":[90],"architecture":[91],"that":[92,107],"separates":[93],"an":[94],"application":[95,182],"into":[96],"smaller":[97],"which":[99],"communicate":[101],"using":[102],"language-agnostic":[103],"protocols.":[104],"We":[105,152],"show":[106],"this":[108],"design":[109],"is":[110,127],"well":[111],"suited":[112],"bioinformatics":[114],"applications":[115],"where":[116],"different":[117,121,124],"written":[119],"languages":[122],"groups":[126],"norm.":[129],"Packaging":[130],"each":[131],"service":[132],"software":[135],"container":[136],"enables":[137],"re-use":[138],"sharing":[140],"key":[142],"between":[144],"applications,":[145],"reducing":[146],"development,":[147],"deployment,":[148],"maintenance":[150],"time.":[151],"demonstrate":[153],"viability":[155],"our":[157],"through":[159],"web":[161],"application,":[162],"entitled":[163],"MIxT":[164],"blood-tumor,":[165],"exploring":[167],"comparing":[169],"transcriptional":[170],"profiles":[171],"blood":[173],"tumor":[175],"samples":[176],"breast":[178],"cancer":[179],"patients.":[180],"integrates":[183],"software,":[186],"up-to-date":[187],"information":[188],"modern":[193],"libraries.":[196]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
