{"id":"https://openalex.org/W2604207082","doi":"https://doi.org/10.1145/3107411.3107442","title":"Knowledge Rich Natural Language Queries over Structured Biological Databases","display_name":"Knowledge Rich Natural Language Queries over Structured Biological Databases","publication_year":2017,"publication_date":"2017-08-20","ids":{"openalex":"https://openalex.org/W2604207082","doi":"https://doi.org/10.1145/3107411.3107442","mag":"2604207082"},"language":"en","primary_location":{"id":"doi:10.1145/3107411.3107442","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107442","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030091324","display_name":"Hasan M. Jamil","orcid":"https://orcid.org/0000-0002-3124-3780"},"institutions":[{"id":"https://openalex.org/I155093810","display_name":"University of Idaho","ror":"https://ror.org/03hbp5t65","country_code":"US","type":"education","lineage":["https://openalex.org/I155093810"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hasan M. Jamil","raw_affiliation_strings":["University of Idaho, Moscow, ID, USA"],"affiliations":[{"raw_affiliation_string":"University of Idaho, Moscow, ID, USA","institution_ids":["https://openalex.org/I155093810"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5030091324"],"corresponding_institution_ids":["https://openalex.org/I155093810"],"apc_list":null,"apc_paid":null,"fwci":0.2127,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.52569172,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"352","last_page":"361"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8232015371322632},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.5776116847991943},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5150027275085449},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.45198264718055725},{"id":"https://openalex.org/keywords/natural","display_name":"Natural (archaeology)","score":0.43354931473731995},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.43044495582580566}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8232015371322632},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.5776116847991943},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5150027275085449},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.45198264718055725},{"id":"https://openalex.org/C2776608160","wikidata":"https://www.wikidata.org/wiki/Q4785462","display_name":"Natural (archaeology)","level":2,"score":0.43354931473731995},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.43044495582580566},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3107411.3107442","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107442","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5}],"awards":[{"id":"https://openalex.org/G4492369080","display_name":null,"funder_award_id":"DRL 1515550","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G757854156","display_name":null,"funder_award_id":"IIS 0612203","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W47135330","https://openalex.org/W1486918153","https://openalex.org/W1492185548","https://openalex.org/W1494520626","https://openalex.org/W1513289534","https://openalex.org/W1553436273","https://openalex.org/W1880208256","https://openalex.org/W1897294521","https://openalex.org/W1976258225","https://openalex.org/W1982363712","https://openalex.org/W2045444051","https://openalex.org/W2064873232","https://openalex.org/W2074678732","https://openalex.org/W2085609918","https://openalex.org/W2099743151","https://openalex.org/W2102239864","https://openalex.org/W2103017472","https://openalex.org/W2110899053","https://openalex.org/W2114676910","https://openalex.org/W2121612399","https://openalex.org/W2124410204","https://openalex.org/W2130805825","https://openalex.org/W2137802165","https://openalex.org/W2146980885","https://openalex.org/W2149728171","https://openalex.org/W2159561309","https://openalex.org/W2164394614","https://openalex.org/W2181951075","https://openalex.org/W2252712043","https://openalex.org/W2260667602","https://openalex.org/W2280625941","https://openalex.org/W2296769737","https://openalex.org/W2488019365","https://openalex.org/W2488700629","https://openalex.org/W2525381941","https://openalex.org/W2534608142","https://openalex.org/W2536574992","https://openalex.org/W2536769020","https://openalex.org/W2568301119","https://openalex.org/W2573638367","https://openalex.org/W2578341774","https://openalex.org/W4229944198","https://openalex.org/W4242041539","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4283262748","https://openalex.org/W2003932708","https://openalex.org/W2284877871","https://openalex.org/W2138102289","https://openalex.org/W1967424056","https://openalex.org/W868043274","https://openalex.org/W2513523087","https://openalex.org/W4226226396","https://openalex.org/W3153750606","https://openalex.org/W4308854837"],"abstract_inverted_index":{"Increasingly,":[0],"keyword,":[1],"natural":[2,53,120,150,162],"language":[3,54,66,121,151,163],"and":[4,15,24,45,72,111],"NoSQL":[5],"queries":[6,152],"are":[7,30],"used":[8],"for":[9,32],"information":[10],"retrieval":[11],"from":[12,39,98],"both":[13],"traditional":[14],"non-traditional":[16],"databases":[17,155],"such":[18,91],"as":[19],"web,":[20],"document,":[21],"GIS,":[22],"legal,":[23],"health":[25],"databases.":[26],"While":[27],"their":[28,35],"popularity":[29],"undeniable":[31],"obvious":[33],"reasons,":[34],"engineering":[36],"is":[37,67,78,165],"far":[38],"simple.":[40],"In":[41,80],"most":[42],"part,":[43],"semantics":[44],"intent":[46],"preserving":[47],"mapping":[48],"of":[49,132,160],"a":[50,58,63,69,85,108,112,137,157],"well":[51,124],"understood":[52],"query":[55,65,113,164],"expressed":[56],"over":[57,153],"structured":[59,64,126],"database":[60],"schema":[61],"to":[62,74,89,116,123,148],"still":[68],"difficult":[70],"task,":[71],"research":[73],"tame":[75],"the":[76,95,99,130,161],"complexity":[77],"intense.":[79],"this":[81],"paper,":[82],"we":[83],"propose":[84],"multi-level":[86,105],"knowledge-based":[87],"middleware":[88],"facilitate":[90],"mappings":[92],"that":[93,144],"separate":[94],"conceptual":[96],"level":[97],"physical":[100],"level.":[101],"We":[102,128],"augment":[103],"these":[104],"abstractions":[106],"with":[107],"concept":[109],"reasoner":[110],"strategy":[114],"engine":[115],"dynamically":[117],"link":[118],"arbitrary":[119,149,154],"querying":[122],"defined":[125],"queries.":[127],"demonstrate":[129],"feasibility":[131],"our":[133],"approach":[134],"by":[135],"presenting":[136],"Datalog":[138],"based":[139],"prototype":[140],"system,":[141],"called":[142],"BioSmart,":[143],"can":[145],"compute":[146],"responses":[147],"once":[156],"syntactic":[158],"classification":[159],"made.":[166]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
