{"id":"https://openalex.org/W2747936139","doi":"https://doi.org/10.1145/3107411.3107422","title":"HEMnet","display_name":"HEMnet","publication_year":2017,"publication_date":"2017-08-20","ids":{"openalex":"https://openalex.org/W2747936139","doi":"https://doi.org/10.1145/3107411.3107422","mag":"2747936139"},"language":"en","primary_location":{"id":"doi:10.1145/3107411.3107422","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107422","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101918765","display_name":"Edward W Huang","orcid":"https://orcid.org/0000-0002-4461-8545"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Edward W. Huang","raw_affiliation_strings":["University of Illinois at Urbana-Champaign, Urbana, IL, USA"],"affiliations":[{"raw_affiliation_string":"University of Illinois at Urbana-Champaign, Urbana, IL, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100371280","display_name":"Sheng Wang","orcid":"https://orcid.org/0000-0002-5718-7529"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sheng Wang","raw_affiliation_strings":["University of Illinois at Urbana-Champaign, Urbana, IL, USA"],"affiliations":[{"raw_affiliation_string":"University of Illinois at Urbana-Champaign, Urbana, IL, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101511719","display_name":"Bingxue Li","orcid":"https://orcid.org/0009-0008-6313-2138"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210146387","display_name":"Guang\u2019anmen Hospital","ror":"https://ror.org/04gjmb875","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146387"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bingxue Li","raw_affiliation_strings":["Guang'anmen Hospital &amp; China Academy of Chinese Medical Sciences, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Guang'anmen Hospital &amp; China Academy of Chinese Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210146387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101013606","display_name":"Ran Zhang","orcid":"https://orcid.org/0000-0001-7870-0742"},"institutions":[{"id":"https://openalex.org/I4210146387","display_name":"Guang\u2019anmen Hospital","ror":"https://ror.org/04gjmb875","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146387"]},{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ran Zhang","raw_affiliation_strings":["Guang'anmen Hospital &amp; China Academy of Chinese Medical Sciences, Beijing, China","National Data Center of Traditional Chinese Medicine &amp; China Academy of Chinese Medical Sciences, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Guang'anmen Hospital &amp; China Academy of Chinese Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210146387"]},{"raw_affiliation_string":"National Data Center of Traditional Chinese Medicine &amp; China Academy of Chinese Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073555542","display_name":"Baoyan Liu","orcid":"https://orcid.org/0000-0002-9677-5366"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Baoyan Liu","raw_affiliation_strings":["National Data Center of Traditional Chinese Medicine &amp; China Academy of Chinese Medical Sciences, Beijing, China"],"affiliations":[{"raw_affiliation_string":"National Data Center of Traditional Chinese Medicine &amp; China Academy of Chinese Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012982867","display_name":"Runshun Zhang","orcid":"https://orcid.org/0000-0002-7127-8865"},"institutions":[{"id":"https://openalex.org/I4210146387","display_name":"Guang\u2019anmen Hospital","ror":"https://ror.org/04gjmb875","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146387"]},{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Runshun Zhang","raw_affiliation_strings":["Guang'anmen Hospital &amp; China Academy of Chinese Medical Sciences, Beijing, China","National Data Center of Traditional Chinese Medicine &amp; China Academy of Chinese Medical Sciences, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Guang'anmen Hospital &amp; China Academy of Chinese Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210146387"]},{"raw_affiliation_string":"National Data Center of Traditional Chinese Medicine &amp; China Academy of Chinese Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100453996","display_name":"Jie Liu","orcid":"https://orcid.org/0000-0001-5310-7520"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210146387","display_name":"Guang\u2019anmen Hospital","ror":"https://ror.org/04gjmb875","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146387"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Liu","raw_affiliation_strings":["Guang'anmen Hospital &amp; China Academy of Chinese Medical Sciences, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Guang'anmen Hospital &amp; China Academy of Chinese Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210146387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052838340","display_name":"Xuezhong Zhou","orcid":"https://orcid.org/0000-0002-4713-3594"},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuezhong Zhou","raw_affiliation_strings":["Beijing Jiaotong University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Beijing Jiaotong University, Beijing, China","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101863998","display_name":"Hongsheng Lin","orcid":"https://orcid.org/0000-0002-0778-6590"},"institutions":[{"id":"https://openalex.org/I4210146387","display_name":"Guang\u2019anmen Hospital","ror":"https://ror.org/04gjmb875","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146387"]},{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongsheng Lin","raw_affiliation_strings":["Guang'anmen Hospital &amp; China Academy of Chinese Medical Sciences, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Guang'anmen Hospital &amp; China Academy of Chinese Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210146387"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028518494","display_name":"ChengXiang Zhai","orcid":"https://orcid.org/0000-0002-6434-3702"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"ChengXiang Zhai","raw_affiliation_strings":["University of Illinois at Urbana-Champaign, Urbana, IL, USA"],"affiliations":[{"raw_affiliation_string":"University of Illinois at Urbana-Champaign, Urbana, IL, USA","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5101918765"],"corresponding_institution_ids":["https://openalex.org/I157725225"],"apc_list":null,"apc_paid":null,"fwci":0.1063,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.48349231,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"378","last_page":"387"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7633049488067627},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.49445319175720215},{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.4584277868270874},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.4499080777168274},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.44702577590942383},{"id":"https://openalex.org/keywords/medical-record","display_name":"Medical record","score":0.41116398572921753},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3747900128364563},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2207350730895996},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10410121083259583}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7633049488067627},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.49445319175720215},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.4584277868270874},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.4499080777168274},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.44702577590942383},{"id":"https://openalex.org/C195910791","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Medical record","level":2,"score":0.41116398572921753},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3747900128364563},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2207350730895996},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10410121083259583},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3107411.3107422","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107422","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1346049954","display_name":null,"funder_award_id":"1U54GM114838","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2783837403","display_name":null,"funder_award_id":"DGE-1144245","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4113434887","display_name":null,"funder_award_id":"201407001","funder_id":"https://openalex.org/F4320323484","funder_display_name":"State Administration of Traditional Chinese Medicine of the People's Republic of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320323484","display_name":"State Administration of Traditional Chinese Medicine of the People's Republic of China","ror":"https://ror.org/003cpqh10"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W8870360","https://openalex.org/W103340358","https://openalex.org/W646837422","https://openalex.org/W1517032997","https://openalex.org/W1614298861","https://openalex.org/W1961978963","https://openalex.org/W1964319106","https://openalex.org/W1968766175","https://openalex.org/W1979300931","https://openalex.org/W1986908923","https://openalex.org/W1994769053","https://openalex.org/W2000771269","https://openalex.org/W2009843946","https://openalex.org/W2018807282","https://openalex.org/W2018984973","https://openalex.org/W2021399844","https://openalex.org/W2032797370","https://openalex.org/W2040058001","https://openalex.org/W2055909810","https://openalex.org/W2064337796","https://openalex.org/W2094726706","https://openalex.org/W2095818009","https://openalex.org/W2096173332","https://openalex.org/W2100582962","https://openalex.org/W2117235735","https://openalex.org/W2119576794","https://openalex.org/W2123089829","https://openalex.org/W2125118217","https://openalex.org/W2139984188","https://openalex.org/W2141847884","https://openalex.org/W2146739259","https://openalex.org/W2162010993","https://openalex.org/W2163563958","https://openalex.org/W2165600579","https://openalex.org/W2284851926","https://openalex.org/W2294550615","https://openalex.org/W2368233052","https://openalex.org/W2394638270","https://openalex.org/W2404901863","https://openalex.org/W2461245993","https://openalex.org/W2545104188","https://openalex.org/W2550226945","https://openalex.org/W2557858004","https://openalex.org/W2744744159","https://openalex.org/W2770983033","https://openalex.org/W2970076284","https://openalex.org/W4206571807","https://openalex.org/W4245024447","https://openalex.org/W4293241248","https://openalex.org/W6600367688"],"related_works":["https://openalex.org/W4380150146","https://openalex.org/W3024870410","https://openalex.org/W2410652950","https://openalex.org/W4283773154","https://openalex.org/W3139174110","https://openalex.org/W4289597203","https://openalex.org/W2085630472","https://openalex.org/W1977098485","https://openalex.org/W4285201053","https://openalex.org/W2753779043"],"abstract_inverted_index":{"The":[0],"continual":[1],"growth":[2],"of":[3,21,28,52,162],"electronic":[4],"medical":[5,53,123],"record":[6],"(EMR)":[7],"databases":[8],"has":[9],"paved":[10],"the":[11,19,26,50,119,139,155,160,198],"way":[12],"for":[13,188],"many":[14],"data":[15,98,109],"mining":[16],"applications,":[17],"including":[18],"discovery":[20],"novel":[22],"disease-drug":[23],"associations":[24],"and":[25,56,99,114,135],"prediction":[27],"patient":[29],"survival":[30,174],"rates.":[31],"However,":[32],"these":[33],"tasks":[34],"are":[35,39],"hindered":[36],"because":[37],"EMRs":[38,104],"usually":[40],"segmented":[41],"or":[42],"incomplete.":[43],"EMR":[44,108],"analysis":[45],"is":[46],"further":[47],"limited":[48],"by":[49,105],"overabundance":[51],"term":[54],"synonyms":[55],"morphologies,":[57],"which":[58],"causes":[59],"existing":[60],"techniques":[61,79],"to":[62,82,94,117,142,153,166,169],"mismatch":[63],"records":[64],"containing":[65],"semantically":[66],"similar":[67],"but":[68],"lexically":[69],"distinct":[70],"terms.":[71],"Current":[72],"solutions":[73],"fill":[74],"in":[75,103,138,192],"missing":[76,97],"values":[77],"with":[78,110,172],"that":[80,178],"tend":[81],"introduce":[83],"noise":[84],"rather":[85],"than":[86],"reduce":[87],"it.":[88],"In":[89],"this":[90,129,149,163],"paper,":[91],"we":[92,147],"propose":[93],"simultaneously":[95],"infer":[96],"solve":[100],"semantic":[101],"mismatching":[102],"first":[106],"integrating":[107],"molecular":[111],"interaction":[112],"networks":[113],"domain":[115],"knowledge":[116],"build":[118],"HEMnet,":[120],"a":[121,132,193],"heterogeneous":[122],"information":[124,152],"network.":[125],"We":[126,158,176],"then":[127],"project":[128],"network":[130,140],"onto":[131],"low-dimensional":[133],"space,":[134],"group":[136],"entities":[137],"according":[141,165],"their":[143],"relative":[144],"distances.":[145],"Lastly,":[146],"use":[148],"entity":[150],"distance":[151],"enrich":[154],"original":[156],"EMRs.":[157],"evaluate":[159],"effectiveness":[161],"method":[164,180],"its":[167],"ability":[168],"separate":[170],"patients":[171],"dissimilar":[173],"functions.":[175],"show":[177],"our":[179],"can":[181],"obtain":[182],"significant":[183],"(p-value":[184],"<":[185],"0.01)":[186],"results":[187],"each":[189],"cancer":[190,195],"subtype":[191],"lung":[194],"dataset,":[196],"while":[197],"baselines":[199],"cannot.":[200]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2017-08-31T00:00:00"}
