{"id":"https://openalex.org/W2746217163","doi":"https://doi.org/10.1145/3107411.3107416","title":"Determining Optimal Features for Predicting Type IV Secretion System Effector Proteins for <i>Coxiella burnetii</i>","display_name":"Determining Optimal Features for Predicting Type IV Secretion System Effector Proteins for <i>Coxiella burnetii</i>","publication_year":2017,"publication_date":"2017-08-20","ids":{"openalex":"https://openalex.org/W2746217163","doi":"https://doi.org/10.1145/3107411.3107416","mag":"2746217163"},"language":"en","primary_location":{"id":"doi:10.1145/3107411.3107416","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107416","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074278707","display_name":"Zhila Esna Ashari","orcid":"https://orcid.org/0000-0003-0454-7794"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhila Esna Ashari","raw_affiliation_strings":["Washington State University, Pullman, WA, USA"],"affiliations":[{"raw_affiliation_string":"Washington State University, Pullman, WA, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070930919","display_name":"Kelly A. Brayton","orcid":"https://orcid.org/0000-0001-7077-5424"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kelly A. Brayton","raw_affiliation_strings":["Washington State University, Pullman, WA, USA"],"affiliations":[{"raw_affiliation_string":"Washington State University, Pullman, WA, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037467986","display_name":"Shira L. Broschat","orcid":"https://orcid.org/0000-0001-9894-7371"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shira L. Broschat","raw_affiliation_strings":["Washington State University, Pullman, WA, USA"],"affiliations":[{"raw_affiliation_string":"Washington State University, Pullman, WA, USA","institution_ids":["https://openalex.org/I72951846"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5074278707"],"corresponding_institution_ids":["https://openalex.org/I72951846"],"apc_list":null,"apc_paid":null,"fwci":0.638,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.67461299,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"346","last_page":"351"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11684","display_name":"Vibrio bacteria research studies","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/effector","display_name":"Effector","score":0.9670193195343018},{"id":"https://openalex.org/keywords/coxiella-burnetii","display_name":"Coxiella burnetii","score":0.8044816255569458},{"id":"https://openalex.org/keywords/secretion","display_name":"Secretion","score":0.5940090417861938},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.549828290939331},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5328474640846252},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5306954383850098},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5170224905014038},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4544716775417328},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4528334140777588},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.41654539108276367},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.20699188113212585},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1754673719406128},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.10815829038619995}],"concepts":[{"id":"https://openalex.org/C51785407","wikidata":"https://www.wikidata.org/wiki/Q2627568","display_name":"Effector","level":2,"score":0.9670193195343018},{"id":"https://openalex.org/C2776607032","wikidata":"https://www.wikidata.org/wiki/Q133971","display_name":"Coxiella burnetii","level":2,"score":0.8044816255569458},{"id":"https://openalex.org/C49039625","wikidata":"https://www.wikidata.org/wiki/Q84230","display_name":"Secretion","level":2,"score":0.5940090417861938},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.549828290939331},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5328474640846252},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5306954383850098},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5170224905014038},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4544716775417328},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4528334140777588},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.41654539108276367},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.20699188113212585},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1754673719406128},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.10815829038619995},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3107411.3107416","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107416","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1975304761","https://openalex.org/W1988272131","https://openalex.org/W1992965194","https://openalex.org/W1994475681","https://openalex.org/W2013784236","https://openalex.org/W2033132839","https://openalex.org/W2061953258","https://openalex.org/W2062418171","https://openalex.org/W2085102470","https://openalex.org/W2099397046","https://openalex.org/W2102766810","https://openalex.org/W2104873783","https://openalex.org/W2112502431","https://openalex.org/W2115434912","https://openalex.org/W2148968245","https://openalex.org/W2152770371","https://openalex.org/W2161746138","https://openalex.org/W2162792752","https://openalex.org/W2164025376","https://openalex.org/W2167185550","https://openalex.org/W2233407458"],"related_works":["https://openalex.org/W4230283440","https://openalex.org/W2148674193","https://openalex.org/W4392860616","https://openalex.org/W3184145232","https://openalex.org/W3213423095","https://openalex.org/W2158295903","https://openalex.org/W2582563843","https://openalex.org/W1899329792","https://openalex.org/W2808185338","https://openalex.org/W3175155005"],"abstract_inverted_index":{"Type":[0],"IV":[1,25],"secretion":[2],"systems":[3],"(T4SS)":[4],"are":[5,20],"constructed":[6],"from":[7,73],"multiple":[8],"protein":[9],"complexes":[10],"that":[11],"exist":[12],"in":[13,96,122,156],"some":[14],"types":[15,79],"of":[16,46,80,106,110,131,153,162,168],"bacterial":[17],"pathogens":[18],"and":[19,35,42,58,63,99,108,125],"responsible":[21],"for":[22,103],"delivering":[23],"type":[24],"effector":[26],"proteins":[27],"into":[28],"host":[29,39],"cells.":[30],"Effectors":[31],"target":[32],"eukaryotic":[33],"cells":[34],"try":[36],"to":[37,54,70,85,127,142,150],"manipulate":[38],"cell":[40],"processes":[41],"the":[43,47,93,116,129,144,163,166],"immune":[44],"system":[45],"host.":[48],"Some":[49],"work":[50],"has":[51],"been":[52,68,83],"done":[53],"validate":[55],"effectors":[56,72,107,124],"experimentally,":[57],"recently":[59],"a":[60,104,135,151,157],"few":[61],"scoring":[62],"machine":[64],"learning-based":[65],"methods":[66],"have":[67,82],"developed":[69,141],"predict":[71],"whole":[74],"genome":[75],"sequences.":[76],"However,":[77],"different":[78],"features":[81,94,117,146,154],"suggested":[84],"be":[86],"effective.":[87],"In":[88],"this":[89],"work,":[90],"we":[91,114],"gathered":[92],"proposed":[95,155],"pre-vious":[97],"reports":[98],"calculated":[100],"their":[101,120],"values":[102],"dataset":[105],"non-effectors":[109,126],"Coxiella":[111],"burnetii.":[112],"Then":[113],"ranked":[115],"based":[118],"on":[119],"importance":[121],"classifying":[123],"determine":[128],"set":[130,152],"optimal":[132,145,170],"features.":[133,171],"Finally,":[134],"Support":[136],"Vector":[137],"Machine":[138],"model":[139],"was":[140],"test":[143],"by":[147],"comparing":[148],"them":[149],"previous":[158],"study.":[159],"The":[160],"outcome":[161],"comparison":[164],"supports":[165],"effectiveness":[167],"our":[169]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
