{"id":"https://openalex.org/W2752504193","doi":"https://doi.org/10.1145/3102304.3102318","title":"A Shared Memory Method For Enhancing The HTNGH AlgorithmPerformance","display_name":"A Shared Memory Method For Enhancing The HTNGH AlgorithmPerformance","publication_year":2017,"publication_date":"2017-07-19","ids":{"openalex":"https://openalex.org/W2752504193","doi":"https://doi.org/10.1145/3102304.3102318","mag":"2752504193"},"language":"en","primary_location":{"id":"doi:10.1145/3102304.3102318","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3102304.3102318","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Future Networks and Distributed Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014994765","display_name":"Muhannad A. Abu\u2010Hashem","orcid":null},"institutions":[{"id":"https://openalex.org/I91633459","display_name":"Middle East University","ror":"https://ror.org/059bgad73","country_code":"JO","type":"education","lineage":["https://openalex.org/I91633459"]}],"countries":["JO"],"is_corresponding":true,"raw_author_name":"Muhannad A. Abu-Hashem","raw_affiliation_strings":["Middle East University, Jordan"],"affiliations":[{"raw_affiliation_string":"Middle East University, Jordan","institution_ids":["https://openalex.org/I91633459"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012685243","display_name":"Diaa Uliyan","orcid":"https://orcid.org/0000-0002-0777-9729"},"institutions":[{"id":"https://openalex.org/I91633459","display_name":"Middle East University","ror":"https://ror.org/059bgad73","country_code":"JO","type":"education","lineage":["https://openalex.org/I91633459"]}],"countries":["JO"],"is_corresponding":false,"raw_author_name":"Diaa M. Uliyan","raw_affiliation_strings":["Middle East University, Jordan"],"affiliations":[{"raw_affiliation_string":"Middle East University, Jordan","institution_ids":["https://openalex.org/I91633459"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064962134","display_name":"Abdelrahman Abuarqoub","orcid":"https://orcid.org/0000-0001-6576-8932"},"institutions":[{"id":"https://openalex.org/I91633459","display_name":"Middle East University","ror":"https://ror.org/059bgad73","country_code":"JO","type":"education","lineage":["https://openalex.org/I91633459"]}],"countries":["JO"],"is_corresponding":false,"raw_author_name":"Abdelrahman Abuarqoub","raw_affiliation_strings":["Middle East University, Jordan"],"affiliations":[{"raw_affiliation_string":"Middle East University, Jordan","institution_ids":["https://openalex.org/I91633459"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5014994765"],"corresponding_institution_ids":["https://openalex.org/I91633459"],"apc_list":null,"apc_paid":null,"fwci":0.1063,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.48559628,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6534584760665894}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6534584760665894}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3102304.3102318","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3102304.3102318","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Future Networks and Distributed Systems","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5299999713897705,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323382","display_name":"University of Jordan","ror":"https://ror.org/05k89ew48"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W118013854","https://openalex.org/W1592614241","https://openalex.org/W1694876563","https://openalex.org/W1968702502","https://openalex.org/W1983792126","https://openalex.org/W1986014242","https://openalex.org/W1995798033","https://openalex.org/W2015292449","https://openalex.org/W2029195137","https://openalex.org/W2034528478","https://openalex.org/W2036295979","https://openalex.org/W2052831012","https://openalex.org/W2055043387","https://openalex.org/W2056511458","https://openalex.org/W2067073747","https://openalex.org/W2068448872","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2094589769","https://openalex.org/W2106882534","https://openalex.org/W2113359061","https://openalex.org/W2115394533","https://openalex.org/W2120866529","https://openalex.org/W2121691652","https://openalex.org/W2127774996","https://openalex.org/W2132303133","https://openalex.org/W2132926880","https://openalex.org/W2135341269","https://openalex.org/W2136047158","https://openalex.org/W2139596748","https://openalex.org/W2140872496","https://openalex.org/W2142619120","https://openalex.org/W2143210482","https://openalex.org/W2143357251","https://openalex.org/W2144362290","https://openalex.org/W2158714788","https://openalex.org/W2165654401","https://openalex.org/W2180764291","https://openalex.org/W2477349094","https://openalex.org/W2566632442","https://openalex.org/W2601913882","https://openalex.org/W2916251779"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2093578348","https://openalex.org/W2376932109","https://openalex.org/W2382290278","https://openalex.org/W2766271392","https://openalex.org/W2350741829","https://openalex.org/W3004735627"],"abstract_inverted_index":{"In":[0,73],"bioinformatics,":[1],"pair-wise":[2],"alignment":[3,52,106],"plays":[4],"a":[5,30,78,84],"significant":[6],"role":[7],"insequence":[8],"comparison":[9,27,50],"by":[10],"rating":[11],"the":[12,39,45,62,104,112,116,134,141,148,151,157,162,167],"similarities":[13],"and":[14,21,51,71,97,144],"distances":[15],"between":[16,166],"protein,":[17],"DeoxyriboNucleic":[18],"Acid":[19,23],"(DNA),":[20],"RiboNucleic":[22],"(RNA)":[24],"sequences.":[25],"Sequence":[26],"considered":[28],"as":[29],"key":[31],"stone":[32],"in":[33,61,140,164],"building":[34],"distance":[35],"matrices.":[36],"Due":[37],"to":[38,101,161],"rapid":[40],"growth":[41],"of":[42,94,111,119,125,133],"molecular":[43],"databases,":[44],"need":[46],"for":[47,83],"faster":[48],"sequence":[49,105],"has":[53],"become":[54],"anecessity.":[55],"High":[56],"performance":[57,69,165],"computing":[58],"impacthas":[59],"increased":[60],"last":[63],"decade":[64],"through":[65],"providing":[66],"many":[67],"high":[68],"architectures":[70],"tools.":[72],"this":[74],"paper":[75],"we":[76],"present":[77],"parallel":[79,136],"shared":[80],"memory":[81],"design":[82],"dynamic":[85],"programming":[86],"algorithm":[87,121,159],"named":[88],"Hash":[89],"Table-N-Gram-Hirschberg":[90],"(HT-NGH)":[91],"an":[92,138],"extension":[93],"Hashing-N-Gram-Hirschberg":[95],"(HNGH)":[96],"N-Gram-Hirschberg":[98],"(NGH)":[99],"algorithm,":[100],"speed":[102],"up":[103],"construction":[107],"process.":[108],"The":[109,130],"focus":[110],"proposed":[113,135,158],"method":[114,153],"ison":[115],"transformation":[117],"phase":[118],"HT-NGH":[120,126],"since":[122],"it":[123],"takes10%":[124],"overall":[127],"run":[128],"time.":[129],"experimental":[131],"evaluation":[132],"designshows":[137],"enhancement":[139],"execution":[142],"time":[143],"speedup":[145],"without":[146],"sacrificing":[147],"accuracy.":[149],"However,":[150],"decomposition":[152],"might":[154],"slightly":[155],"slowdown":[156],"due":[160],"differences":[163],"processing":[168],"units.":[169]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
