{"id":"https://openalex.org/W2725280942","doi":"https://doi.org/10.1145/3093338.3093374","title":"A Voice for Bioinformatics","display_name":"A Voice for Bioinformatics","publication_year":2017,"publication_date":"2017-07-05","ids":{"openalex":"https://openalex.org/W2725280942","doi":"https://doi.org/10.1145/3093338.3093374","mag":"2725280942"},"language":"en","primary_location":{"id":"doi:10.1145/3093338.3093374","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3093338.3093374","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing 2017: Sustainability, Success and Impact","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2022/21604","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032851804","display_name":"Carrie Ganote","orcid":"https://orcid.org/0000-0003-3457-8954"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Carrie L. Ganote","raw_affiliation_strings":["National Center for Genome Analysis, Support, St. Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Genome Analysis, Support, St. Bloomington, Indiana","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069368804","display_name":"Sheri Sanders","orcid":"https://orcid.org/0000-0003-2969-2541"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sheri A. Sanders","raw_affiliation_strings":["National Center for Genome Analysis, Support, St. Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Genome Analysis, Support, St. Bloomington, Indiana","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030692926","display_name":"Bhavya Papudeshi","orcid":"https://orcid.org/0000-0001-5359-3100"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bhavya Nalagampalli Papudeshi","raw_affiliation_strings":["National Center for Genome Analysis, Support, St. Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Genome Analysis, Support, St. Bloomington, Indiana","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069552428","display_name":"Phillip D. Blood","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Phillip D. Blood","raw_affiliation_strings":["National Center for Genome Analysis, Support, St. Pittsburgh, Pennsylvania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Genome Analysis, Support, St. Pittsburgh, Pennsylvania","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039718297","display_name":"Thomas G. Doak","orcid":"https://orcid.org/0000-0001-5487-553X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thomas G. Doak","raw_affiliation_strings":["National Center for Genome Analysis, Support, St. Bloomington, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Genome Analysis, Support, St. Bloomington, Indiana","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.3317,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.88229575,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7714532613754272},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6210521459579468},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.54328852891922},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5179537534713745},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.5128819942474365},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.49558913707733154},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4740062654018402},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4635564386844635},{"id":"https://openalex.org/keywords/work","display_name":"Work (physics)","score":0.4256705045700073},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.38963568210601807},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12659436464309692},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12467485666275024}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7714532613754272},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6210521459579468},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.54328852891922},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5179537534713745},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.5128819942474365},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.49558913707733154},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4740062654018402},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4635564386844635},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.4256705045700073},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.38963568210601807},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12659436464309692},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12467485666275024},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3093338.3093374","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3093338.3093374","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing 2017: Sustainability, Success and Impact","raw_type":"proceedings-article"},{"id":"pmh:oai:scholarworks.iu.edu:2022/21604","is_oa":true,"landing_page_url":"http://hdl.handle.net/2022/21604","pdf_url":null,"source":{"id":"https://openalex.org/S4306400988","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Presentation"},{"id":"pmh:oai:scholarworks.iu.edu:2022/21605","is_oa":true,"landing_page_url":"http://hdl.handle.net/2022/21605","pdf_url":null,"source":{"id":"https://openalex.org/S4306400988","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"pmh:oai:scholarworks.iu.edu:2022/21604","is_oa":true,"landing_page_url":"http://hdl.handle.net/2022/21604","pdf_url":null,"source":{"id":"https://openalex.org/S4306400988","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Presentation"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7684588090","display_name":null,"funder_award_id":"61273304","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2041529680","https://openalex.org/W2104846587","https://openalex.org/W2341919318"],"related_works":["https://openalex.org/W4244478748","https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W4223488648","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W4205786897","https://openalex.org/W2134969820","https://openalex.org/W2251605416","https://openalex.org/W188202134"],"abstract_inverted_index":{"One":[0],"of":[1,6,58],"the":[2,9,32,55,59,113,148],"challenges":[3],"to":[4,74,112],"adoption":[5],"HPC":[7],"is":[8,24,70],"disjunction":[10],"between":[11,120],"those":[12,17],"who":[13,18],"need":[14],"it":[15],"and":[16,62,94,122,125,143,156,176],"know":[19],"it.":[20],"Biology":[21],"(specifically,":[22],"genomics)":[23],"a":[25,72,89,98],"growing":[26],"field":[27],"for":[28,45],"computational":[29],"use,":[30],"but":[31],"typical":[33],"biologist":[34],"does":[35],"not":[36],"have":[37,172],"an":[38],"established":[39],"informatics":[40],"background.":[41],"The":[42],"National":[43],"Center":[44],"Genome":[46],"Analysis":[47],"Support":[48],"(NCGAS)":[49],"aids":[50],"users":[51,102],"in":[52,100],"getting":[53],"past":[54],"initial":[56],"shock":[57],"command":[60],"line":[61],"guides":[63],"them":[64],"toward":[65,103],"savvy":[66],"cluster":[67],"use.":[68],"NCGAS":[69],"initiating":[71],"push":[73],"become":[75],"domain":[76],"champions":[77],"alongside":[78],"Oklahoma":[79],"State's":[80],"Brian":[81],"Cougar.":[82],"Our":[83],"position":[84],"at":[85],"IU":[86,124],"gives":[87],"us":[88],"close":[90],"relationship":[91],"with":[92],"XSEDE":[93,104,181],"we":[95,171],"already":[96],"fulfill":[97],"role":[99],"pushing":[101],"resources":[105],"when":[106],"our":[107,174,178],"local":[108],"clusters":[109],"are":[110],"ill-suited":[111],"job.":[114],"We":[115,167],"currently":[116],"act":[117],"as":[118],"liaison":[119],"biologists":[121],"Jetstream,":[123],"TACC's":[126],"research":[127],"computing":[128],"cloud.":[129],"Typical":[130],"issues":[131],"include:":[132],"Software":[133,135],"installation;":[134],"usage":[136],"-":[137],"what":[138],"parameters":[139],"do":[140,145],"I":[141,146],"choose,":[142],"how":[144,154,170],"interpret":[147],"results;":[149],"Batch":[150],"job":[151,157],"submission;":[152],"Understanding":[153],"queues":[155],"handlers":[158],"work;":[159],"Data":[160],"movement,":[161],"Spinning":[162],"up":[163],"VMs":[164],"on":[165,180],"Jetstream":[166],"will":[168],"discuss":[169],"structured":[173],"support,":[175],"illustrate":[177],"impact":[179],"resources.":[182]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
