{"id":"https://openalex.org/W2739682598","doi":"https://doi.org/10.1145/3077136.3084150","title":"BioNex","display_name":"BioNex","publication_year":2017,"publication_date":"2017-07-28","ids":{"openalex":"https://openalex.org/W2739682598","doi":"https://doi.org/10.1145/3077136.3084150","mag":"2739682598"},"language":"en","primary_location":{"id":"doi:10.1145/3077136.3084150","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3077136.3084150","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013361951","display_name":"Patrick Er\u00f1st","orcid":"https://orcid.org/0000-0001-6037-1856"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Patrick Ernst","raw_affiliation_strings":["Max Planck Institut f\u00fcr Informatik, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institut f\u00fcr Informatik, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100887572","display_name":"Arunav Mishra","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Arunav Mishra","raw_affiliation_strings":["Max Planck Institut f\u00fcr Informatik, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institut f\u00fcr Informatik, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075681290","display_name":"Avishek Anand","orcid":"https://orcid.org/0000-0002-0163-0739"},"institutions":[{"id":"https://openalex.org/I4210136150","display_name":"L3S Research Center","ror":"https://ror.org/039t4wk02","country_code":"DE","type":"facility","lineage":["https://openalex.org/I114112103","https://openalex.org/I4210136150","https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Avishek Anand","raw_affiliation_strings":["L3S Research Center, Hanover, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"L3S Research Center, Hanover, Germany","institution_ids":["https://openalex.org/I4210136150"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044722424","display_name":"Vinay Setty","orcid":"https://orcid.org/0000-0002-9777-6758"},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Vinay Setty","raw_affiliation_strings":["Aalborg University, Aalborg, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aalborg University, Aalborg, Denmark","institution_ids":["https://openalex.org/I891191580"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.7002,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.88816645,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1277","last_page":"1280"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.9812999963760376,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.792417049407959},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.7132026553153992},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6489320993423462},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.638737142086029},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.618236780166626},{"id":"https://openalex.org/keywords/popularity","display_name":"Popularity","score":0.5275487303733826},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5184392929077148},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.4498637020587921},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23111018538475037},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.09236297011375427}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.792417049407959},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.7132026553153992},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6489320993423462},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.638737142086029},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.618236780166626},{"id":"https://openalex.org/C2780586970","wikidata":"https://www.wikidata.org/wiki/Q1357284","display_name":"Popularity","level":2,"score":0.5275487303733826},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5184392929077148},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.4498637020587921},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23111018538475037},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.09236297011375427},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3077136.3084150","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3077136.3084150","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.atira.dk:publications/79808a17-6c0a-4c64-b0a8-7bc0511bafeb","is_oa":false,"landing_page_url":"https://vbn.aau.dk/da/publications/79808a17-6c0a-4c64-b0a8-7bc0511bafeb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401731","display_name":"VBN Forskningsportal (Aalborg Universitet)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I891191580","host_organization_name":"Aalborg University","host_organization_lineage":["https://openalex.org/I891191580"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Ernst, P, Mishra, A, Anand, A & Setty, V J 2017, BioNex : A System For Biomedical News Event Exploration. in SIGIR '17 Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval . Association for Computing Machinery (ACM), pp. 1277-1280, The 40th International ACM SIGIR Conference on Research and Development in Information Retrieval, Tokyo, Japan, 07/08/2017. https://doi.org/10.1145/3077136.3084150","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1502916507","https://openalex.org/W1512104599","https://openalex.org/W1538085078","https://openalex.org/W2014409502","https://openalex.org/W2048525542","https://openalex.org/W2088123789","https://openalex.org/W2123142779","https://openalex.org/W2123442489","https://openalex.org/W2140796896","https://openalex.org/W2152565070","https://openalex.org/W2515658387","https://openalex.org/W2550199357","https://openalex.org/W2559938373","https://openalex.org/W2583743728"],"related_works":["https://openalex.org/W2368605798","https://openalex.org/W2518037665","https://openalex.org/W2348524959","https://openalex.org/W2477036161","https://openalex.org/W2368049389","https://openalex.org/W2384861574","https://openalex.org/W4294565801","https://openalex.org/W2170801710","https://openalex.org/W2952704802","https://openalex.org/W2741781807"],"abstract_inverted_index":{"We":[0],"demonstrate":[1],"BioNex,":[2],"a":[3,46,88,130],"system":[4],"to":[5,77,105],"mine,":[6],"rank":[7],"and":[8,22,53,94,111,138],"visualize":[9],"biomedical":[10,15,63,68],"news":[11,28,40,69,109,113,126,135],"events.":[12],"BioNex":[13,98],"takes":[14],"queries":[16],"such":[17],"as":[18],"\"Ebola":[19],"virus":[20],"disease\"":[21],"retrieves":[23],"the":[24,38,79,83,101,107,116,123,144],"k":[25],"most":[26],"relevant":[27,134],"events":[29,41,110,127,142],"for":[30,82,115,125],"them.":[31],"To":[32],"achieve":[33],"this":[34],"we":[35],"first":[36],"mine":[37],"generic":[39],"by":[42],"clustering":[43],"them":[44],"on":[45,87],"daily":[47],"basis":[48],"using":[49,128],"general":[50],"named":[51],"entities":[52,64],"textual":[54],"features.":[55,97],"These":[56],"clusters":[57,73,85,104],"are":[58,74],"also":[59,99,121],"tagged":[60],"with":[61],"disambiguated":[62],"which":[65],"aid":[66],"in":[67],"event":[70,84,103,136],"exploration.":[71],"The":[72,119],"then":[75],"used":[76],"compute":[78],"importance":[80,96],"scores":[81],"based":[86],"combination":[89],"of":[90,132],"textual,":[91],"semantic,":[92],"popularity":[93],"historical":[95],"visualizes":[100],"retrieved":[102],"highlight":[106],"top":[108],"corresponding":[112],"articles":[114],"given":[117],"query.":[118],"visualization":[120],"provides":[122],"context":[124],"(1)":[129],"chain":[131],"historically":[133],"clusters,":[137],"(2)":[139],"other":[140],"non-biomedical":[141],"from":[143],"same":[145],"day.":[146]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2017-08-08T00:00:00"}
