{"id":"https://openalex.org/W2613297071","doi":"https://doi.org/10.1145/3035918.3064048","title":"Massively Parallel Processing of Whole Genome Sequence Data","display_name":"Massively Parallel Processing of Whole Genome Sequence Data","publication_year":2017,"publication_date":"2017-05-09","ids":{"openalex":"https://openalex.org/W2613297071","doi":"https://doi.org/10.1145/3035918.3064048","mag":"2613297071"},"language":"en","primary_location":{"id":"doi:10.1145/3035918.3064048","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3035918.3064048","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2017 ACM International Conference on Management of Data","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008214623","display_name":"Abhishek Roy","orcid":"https://orcid.org/0000-0003-0275-1601"},"institutions":[{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Abhishek Roy","raw_affiliation_strings":["University of Massachusetts Amherst, Amherst, MA, USA"],"affiliations":[{"raw_affiliation_string":"University of Massachusetts Amherst, Amherst, MA, USA","institution_ids":["https://openalex.org/I24603500"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109548832","display_name":"Yanlei Diao","orcid":"https://orcid.org/0009-0000-7793-9671"},"institutions":[{"id":"https://openalex.org/I177605424","display_name":"Amherst College","ror":"https://ror.org/028vqfs63","country_code":"US","type":"education","lineage":["https://openalex.org/I177605424"]},{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanlei Diao","raw_affiliation_strings":["University of Massachusetts Amherst &amp; \u00c9cole Polytechnique, Amherst, MA, USA","Rich Data Analytics at Cloud Scale"],"affiliations":[{"raw_affiliation_string":"University of Massachusetts Amherst &amp; \u00c9cole Polytechnique, Amherst, MA, USA","institution_ids":["https://openalex.org/I177605424","https://openalex.org/I24603500"]},{"raw_affiliation_string":"Rich Data Analytics at Cloud Scale","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078260904","display_name":"Uday S. Evani","orcid":"https://orcid.org/0009-0002-2057-4514"},"institutions":[{"id":"https://openalex.org/I4210151462","display_name":"New York Genome Center","ror":"https://ror.org/05wf2ga96","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210151462"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Uday Evani","raw_affiliation_strings":["New York Genome Center, New York City, NY, USA"],"affiliations":[{"raw_affiliation_string":"New York Genome Center, New York City, NY, USA","institution_ids":["https://openalex.org/I4210151462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004705106","display_name":"Avinash Abhyankar","orcid":"https://orcid.org/0000-0002-6164-5123"},"institutions":[{"id":"https://openalex.org/I4210151462","display_name":"New York Genome Center","ror":"https://ror.org/05wf2ga96","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210151462"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Avinash Abhyankar","raw_affiliation_strings":["New York Genome Center, New York City, NY, USA"],"affiliations":[{"raw_affiliation_string":"New York Genome Center, New York City, NY, USA","institution_ids":["https://openalex.org/I4210151462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038191422","display_name":"Clinton Howarth","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151462","display_name":"New York Genome Center","ror":"https://ror.org/05wf2ga96","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210151462"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Clinton Howarth","raw_affiliation_strings":["New York Genome Center, New York City, NY, USA"],"affiliations":[{"raw_affiliation_string":"New York Genome Center, New York City, NY, USA","institution_ids":["https://openalex.org/I4210151462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029561055","display_name":"R\u00e9mi Le Priol","orcid":null},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]},{"id":"https://openalex.org/I4210151462","display_name":"New York Genome Center","ror":"https://ror.org/05wf2ga96","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210151462"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"R\u00e9mi Le Priol","raw_affiliation_strings":["\u00c9cole Polytechnique &amp; New York Genome Center, Palaiseau, France","University of Massachusetts [Amherst]"],"affiliations":[{"raw_affiliation_string":"\u00c9cole Polytechnique &amp; New York Genome Center, Palaiseau, France","institution_ids":["https://openalex.org/I4210151462","https://openalex.org/I142476485"]},{"raw_affiliation_string":"University of Massachusetts [Amherst]","institution_ids":["https://openalex.org/I24603500"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103978507","display_name":"Toby Bloom","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151462","display_name":"New York Genome Center","ror":"https://ror.org/05wf2ga96","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210151462"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Toby Bloom","raw_affiliation_strings":["New York Genome Center, New York City, NY, USA"],"affiliations":[{"raw_affiliation_string":"New York Genome Center, New York City, NY, USA","institution_ids":["https://openalex.org/I4210151462"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5008214623"],"corresponding_institution_ids":["https://openalex.org/I24603500"],"apc_list":null,"apc_paid":null,"fwci":2.29179638,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.89310637,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"187","last_page":"202"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8031039834022522},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.7425956726074219},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.636665940284729},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5723485946655273},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5643739700317383},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5470694899559021},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5450504422187805},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5096054077148438},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4821279048919678},{"id":"https://openalex.org/keywords/massively-parallel","display_name":"Massively parallel","score":0.4485284090042114},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3114943504333496},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2404463291168213},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.1641736924648285},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10150903463363647},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.08755612373352051}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8031039834022522},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.7425956726074219},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.636665940284729},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5723485946655273},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5643739700317383},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5470694899559021},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5450504422187805},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5096054077148438},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4821279048919678},{"id":"https://openalex.org/C190475519","wikidata":"https://www.wikidata.org/wiki/Q544384","display_name":"Massively parallel","level":2,"score":0.4485284090042114},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3114943504333496},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2404463291168213},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.1641736924648285},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10150903463363647},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.08755612373352051},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3035918.3064048","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3035918.3064048","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2017 ACM International Conference on Management of Data","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-01683398v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-01683398","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://sigmod2017.org/","raw_type":"Conference papers"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G633145777","display_name":null,"funder_award_id":"DBI-1356486","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1891617912","https://openalex.org/W1977859620","https://openalex.org/W1990073900","https://openalex.org/W1992510233","https://openalex.org/W2035461540","https://openalex.org/W2054905474","https://openalex.org/W2063220786","https://openalex.org/W2103441770","https://openalex.org/W2104846587","https://openalex.org/W2105821863","https://openalex.org/W2112099725","https://openalex.org/W2117798581","https://openalex.org/W2119180969","https://openalex.org/W2124985265","https://openalex.org/W2127214385","https://openalex.org/W2131975293","https://openalex.org/W2134113644","https://openalex.org/W2138601221","https://openalex.org/W2143307936","https://openalex.org/W2149059931","https://openalex.org/W2160363604","https://openalex.org/W2168133698","https://openalex.org/W2171777347","https://openalex.org/W2189371416","https://openalex.org/W2337438739","https://openalex.org/W2346143774","https://openalex.org/W2408045830","https://openalex.org/W2507333165","https://openalex.org/W2885727518","https://openalex.org/W2952870794","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W2058965144","https://openalex.org/W2164382479","https://openalex.org/W98480971","https://openalex.org/W2150291671","https://openalex.org/W2027972911","https://openalex.org/W2146343568","https://openalex.org/W2013643406","https://openalex.org/W2157978810","https://openalex.org/W2597809628","https://openalex.org/W2056543843"],"abstract_inverted_index":{"International":[0],"audience":[1]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
