{"id":"https://openalex.org/W2791617365","doi":"https://doi.org/10.1145/3018896.3056793","title":"On parallelizing graph theoretical approaches for identifying causal genes and pathways from very large biological networks","display_name":"On parallelizing graph theoretical approaches for identifying causal genes and pathways from very large biological networks","publication_year":2017,"publication_date":"2017-03-22","ids":{"openalex":"https://openalex.org/W2791617365","doi":"https://doi.org/10.1145/3018896.3056793","mag":"2791617365"},"language":"en","primary_location":{"id":"doi:10.1145/3018896.3056793","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3018896.3056793","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Second International Conference on Internet of things, Data and Cloud Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070935027","display_name":"Jeethu V. Devasia","orcid":"https://orcid.org/0000-0003-4454-3704"},"institutions":[{"id":"https://openalex.org/I114845381","display_name":"National Institute of Technology Calicut","ror":"https://ror.org/03yyd7552","country_code":"IN","type":"education","lineage":["https://openalex.org/I114845381"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Jeethu V. Devasia","raw_affiliation_strings":["National Institute of Technology Calicut, INDIA"],"affiliations":[{"raw_affiliation_string":"National Institute of Technology Calicut, INDIA","institution_ids":["https://openalex.org/I114845381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028108916","display_name":"Priya Chandran","orcid":"https://orcid.org/0000-0003-1822-9447"},"institutions":[{"id":"https://openalex.org/I114845381","display_name":"National Institute of Technology Calicut","ror":"https://ror.org/03yyd7552","country_code":"IN","type":"education","lineage":["https://openalex.org/I114845381"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Priya Chandran","raw_affiliation_strings":["National Institute of Technology Calicut, INDIA"],"affiliations":[{"raw_affiliation_string":"National Institute of Technology Calicut, INDIA","institution_ids":["https://openalex.org/I114845381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051326650","display_name":"Garge Shreya","orcid":null},"institutions":[{"id":"https://openalex.org/I114845381","display_name":"National Institute of Technology Calicut","ror":"https://ror.org/03yyd7552","country_code":"IN","type":"education","lineage":["https://openalex.org/I114845381"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Garge Shreya","raw_affiliation_strings":["National Institute of Technology Calicut, INDIA"],"affiliations":[{"raw_affiliation_string":"National Institute of Technology Calicut, INDIA","institution_ids":["https://openalex.org/I114845381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025194957","display_name":"Aparna Rai","orcid":"https://orcid.org/0000-0001-5345-8590"},"institutions":[{"id":"https://openalex.org/I114845381","display_name":"National Institute of Technology Calicut","ror":"https://ror.org/03yyd7552","country_code":"IN","type":"education","lineage":["https://openalex.org/I114845381"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Aparna R.","raw_affiliation_strings":["National Institute of Technology Calicut, INDIA"],"affiliations":[{"raw_affiliation_string":"National Institute of Technology Calicut, INDIA","institution_ids":["https://openalex.org/I114845381"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5098179612","display_name":"R. Abijith","orcid":null},"institutions":[{"id":"https://openalex.org/I114845381","display_name":"National Institute of Technology Calicut","ror":"https://ror.org/03yyd7552","country_code":"IN","type":"education","lineage":["https://openalex.org/I114845381"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Abijith R.","raw_affiliation_strings":["National Institute of Technology Calicut, INDIA"],"affiliations":[{"raw_affiliation_string":"National Institute of Technology Calicut, INDIA","institution_ids":["https://openalex.org/I114845381"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5070935027"],"corresponding_institution_ids":["https://openalex.org/I114845381"],"apc_list":null,"apc_paid":null,"fwci":0.1063,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.50447173,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8139593601226807},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6330642700195312},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.629306435585022},{"id":"https://openalex.org/keywords/tree-traversal","display_name":"Tree traversal","score":0.612769603729248},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5453826785087585},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.519335150718689},{"id":"https://openalex.org/keywords/graph-traversal","display_name":"Graph traversal","score":0.4792061746120453},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.46154195070266724},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.440059632062912},{"id":"https://openalex.org/keywords/heterogeneous-network","display_name":"Heterogeneous network","score":0.4129793047904968},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3922554552555084},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3041244149208069},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.23749959468841553},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1598532795906067},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.11596429347991943},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10536712408065796}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8139593601226807},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6330642700195312},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.629306435585022},{"id":"https://openalex.org/C140745168","wikidata":"https://www.wikidata.org/wiki/Q1210082","display_name":"Tree traversal","level":2,"score":0.612769603729248},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5453826785087585},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.519335150718689},{"id":"https://openalex.org/C96333769","wikidata":"https://www.wikidata.org/wiki/Q907955","display_name":"Graph traversal","level":3,"score":0.4792061746120453},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.46154195070266724},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.440059632062912},{"id":"https://openalex.org/C158207573","wikidata":"https://www.wikidata.org/wiki/Q5747224","display_name":"Heterogeneous network","level":4,"score":0.4129793047904968},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3922554552555084},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3041244149208069},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.23749959468841553},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1598532795906067},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.11596429347991943},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10536712408065796},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C108037233","wikidata":"https://www.wikidata.org/wiki/Q11375","display_name":"Wireless network","level":3,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3018896.3056793","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3018896.3056793","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Second International Conference on Internet of things, Data and Cloud Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1504591285","https://openalex.org/W1754742998","https://openalex.org/W1974944535","https://openalex.org/W2013501255","https://openalex.org/W2013520054","https://openalex.org/W2019724001","https://openalex.org/W2057545775","https://openalex.org/W2063928888","https://openalex.org/W2074446945","https://openalex.org/W2106474670","https://openalex.org/W2107580398","https://openalex.org/W2109701112","https://openalex.org/W2115708739","https://openalex.org/W2131307178","https://openalex.org/W2141925314","https://openalex.org/W2149414426","https://openalex.org/W2150182123","https://openalex.org/W2154528017","https://openalex.org/W2157401645","https://openalex.org/W2166606182","https://openalex.org/W2167064216","https://openalex.org/W2170283779","https://openalex.org/W2438467919","https://openalex.org/W2513481551","https://openalex.org/W2549794499","https://openalex.org/W2725340395","https://openalex.org/W2953287872","https://openalex.org/W2995564009","https://openalex.org/W4213060373","https://openalex.org/W4247182312"],"related_works":["https://openalex.org/W2200188075","https://openalex.org/W4252596799","https://openalex.org/W4254594467","https://openalex.org/W4230405657","https://openalex.org/W244044452","https://openalex.org/W2552915643","https://openalex.org/W3213135344","https://openalex.org/W170547082","https://openalex.org/W3183956626","https://openalex.org/W2136735429"],"abstract_inverted_index":{"The":[0],"time":[1,140],"taken":[2],"to":[3,25,91,110,132],"compute":[4],"meaningful":[5],"information":[6],"from":[7],"biological":[8,36],"networks":[9,21],"is":[10],"very":[11,23],"high":[12],"for":[13,51],"most":[14],"of":[15,34,42,54,61,77,120,136],"the":[16,32,52,82,112,134],"applications":[17],"and":[18,57,65,86,95,138],"therefore":[19],"these":[20],"are":[22],"hard":[24],"process.":[26],"This":[27],"work":[28],"focuses":[29],"on":[30,141],"improving":[31],"speed":[33],"processing":[35,118],"networks,":[37],"in":[38,73,80,123],"particular,":[39],"faster":[40],"traversal":[41],"genomes":[43],"which":[44],"have":[45,129],"been":[46,108,130],"mapped":[47],"into":[48],"a":[49,70,92],"network":[50],"detection":[53],"causal":[55,84],"genes":[56,64,85],"associated":[58],"pathways.":[59],"Inference":[60],"disease":[62,93],"causing":[63],"their":[66,87],"pathways":[67],"has":[68,107],"achieved":[69],"crucial":[71],"role":[72],"computational":[74],"biology":[75],"because":[76],"its":[78],"practicality":[79],"understanding":[81],"major":[83],"interactions":[88],"that":[89],"lead":[90],"state,":[94],"suggesting":[96],"new":[97],"drug":[98],"targets.":[99],"In":[100],"this":[101],"work,":[102],"Hadoop's":[103],"distributed":[104],"storage":[105],"system":[106],"used":[109],"store":[111],"molecular":[113],"interaction":[114],"network.":[115],"Graph":[116],"parallel":[117],"techniques":[119],"Hadoop":[121],"MapReduce,":[122],"conjunction":[124],"with":[125],"graph":[126],"theoretical":[127],"approaches":[128],"utilized":[131],"improve":[133],"accuracy":[135],"results":[137],"execution":[139],"benchmark":[142],"data.":[143]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
