{"id":"https://openalex.org/W2558091215","doi":"https://doi.org/10.1145/2975167.2985844","title":"Automated Verification of Phenotypes using PubMed","display_name":"Automated Verification of Phenotypes using PubMed","publication_year":2016,"publication_date":"2016-10-02","ids":{"openalex":"https://openalex.org/W2558091215","doi":"https://doi.org/10.1145/2975167.2985844","mag":"2558091215"},"language":"en","primary_location":{"id":"doi:10.1145/2975167.2985844","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2975167.2985844","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038291470","display_name":"Ryan Bridges","orcid":null},"institutions":[{"id":"https://openalex.org/I72509657","display_name":"Epic Systems (United States)","ror":"https://ror.org/029z3g861","country_code":"US","type":"company","lineage":["https://openalex.org/I72509657"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ryan Bridges","raw_affiliation_strings":["Epic Systems, Verona, WI"],"affiliations":[{"raw_affiliation_string":"Epic Systems, Verona, WI","institution_ids":["https://openalex.org/I72509657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058220738","display_name":"Jette Henderson","orcid":"https://orcid.org/0000-0003-3562-6540"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jette Henderson","raw_affiliation_strings":["The University of Texas at Austin, Austin, TX"],"affiliations":[{"raw_affiliation_string":"The University of Texas at Austin, Austin, TX","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022272635","display_name":"Joyce C. Ho","orcid":"https://orcid.org/0000-0001-9168-3916"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joyce C. Ho","raw_affiliation_strings":["Emory University, Atlanta, GA"],"affiliations":[{"raw_affiliation_string":"Emory University, Atlanta, GA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036790226","display_name":"Byron Wallace","orcid":"https://orcid.org/0000-0003-2409-7735"},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Byron C. Wallace","raw_affiliation_strings":["Northeastern University, Boston, MA"],"affiliations":[{"raw_affiliation_string":"Northeastern University, Boston, MA","institution_ids":["https://openalex.org/I12912129"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103071668","display_name":"Joydeep Ghosh","orcid":"https://orcid.org/0000-0002-7366-3548"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joydeep Ghosh","raw_affiliation_strings":["The University of Texas at Austin, Austin, TX"],"affiliations":[{"raw_affiliation_string":"The University of Texas at Austin, Austin, TX","institution_ids":["https://openalex.org/I86519309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5038291470"],"corresponding_institution_ids":["https://openalex.org/I72509657"],"apc_list":null,"apc_paid":null,"fwci":0.3335,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.6852063,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"595","last_page":"602"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7027155160903931},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.6229654550552368},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5450587272644043},{"id":"https://openalex.org/keywords/clinical-phenotype","display_name":"Clinical phenotype","score":0.4823964834213257},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.43411803245544434},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42335045337677},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38492661714553833},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3566678762435913},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10054236650466919}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7027155160903931},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.6229654550552368},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5450587272644043},{"id":"https://openalex.org/C3020646490","wikidata":"https://www.wikidata.org/wiki/Q25203551","display_name":"Clinical phenotype","level":4,"score":0.4823964834213257},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.43411803245544434},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42335045337677},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38492661714553833},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3566678762435913},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10054236650466919},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2975167.2985844","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2975167.2985844","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5899999737739563,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1614298861","https://openalex.org/W1759667598","https://openalex.org/W1852656582","https://openalex.org/W1969116741","https://openalex.org/W1976801265","https://openalex.org/W1994306321","https://openalex.org/W2027652926","https://openalex.org/W2053039860","https://openalex.org/W2064223985","https://openalex.org/W2101086247","https://openalex.org/W2102575587","https://openalex.org/W2105637130","https://openalex.org/W2105714645","https://openalex.org/W2112339576","https://openalex.org/W2121382432","https://openalex.org/W2125000424","https://openalex.org/W2135496322","https://openalex.org/W2295806952","https://openalex.org/W2408811052"],"related_works":["https://openalex.org/W3164771895","https://openalex.org/W2604464132","https://openalex.org/W2161088626","https://openalex.org/W3029893540","https://openalex.org/W2314682585","https://openalex.org/W2313584493","https://openalex.org/W2135667114","https://openalex.org/W2110968082","https://openalex.org/W3122747281","https://openalex.org/W2966053455"],"abstract_inverted_index":{"In":[0,69],"the":[1,36,51,91,94],"realm":[2],"of":[3,21,28,38,55,77,93,116,121],"data":[4],"driven":[5],"clinical":[6,87,123],"research,":[7],"medical":[8],"concepts,":[9],"or":[10],"phenotypes,":[11],"are":[12,48],"used":[13],"to":[14,34,85,100],"serve":[15],"as":[16],"indicators":[17],"for":[18],"patient":[19],"clusters":[20],"interest.":[22],"Often,":[23],"studies":[24],"will":[25],"use":[26],"groups":[27,47,115,120],"algorithmically":[29,49],"generated":[30,102,114],"phenotypes":[31,101,117],"(feature":[32],"groups)":[33],"predict":[35],"occurrence":[37],"heart":[39],"disease,":[40],"diabetes,":[41],"and":[42,66,108],"other":[43],"conditions.":[44],"When":[45],"these":[46],"generated,":[50],"most":[52],"common":[53],"method":[54,76,95],"verification":[56,78],"is":[57],"manual":[58],"human":[59],"annotation,":[60],"which":[61],"can":[62],"be":[63],"time":[64],"consuming":[65],"sometimes":[67],"inconsistent.":[68],"this":[70],"paper,":[71],"we":[72],"propose":[73],"a":[74],"supervision-free":[75],"that":[79],"uses":[80],"co-occurrence":[81],"in":[82],"PubMed":[83],"articles":[84],"determine":[86],"significance.":[88],"We":[89],"demonstrate":[90],"efficacy":[92],"by":[96],"1)":[97],"applying":[98],"it":[99,111],"through":[103],"automatic":[104],"machine":[105],"learning":[106],"methods":[107],"2)":[109],"showing":[110],"separates":[112],"randomly":[113],"from":[118],"curated":[119],"known,":[122],"phenotypes.":[124]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}