{"id":"https://openalex.org/W2557401331","doi":"https://doi.org/10.1145/2975167.2985669","title":"DIGNiFI","display_name":"DIGNiFI","publication_year":2016,"publication_date":"2016-10-02","ids":{"openalex":"https://openalex.org/W2557401331","doi":"https://doi.org/10.1145/2975167.2985669","mag":"2557401331"},"language":"en","primary_location":{"id":"doi:10.1145/2975167.2985669","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2975167.2985669","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100705977","display_name":"Xiaoxia Liu","orcid":"https://orcid.org/0009-0003-6662-9020"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiaoxia Liu","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine (NLM), National Institutes of Health, Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine (NLM), National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051597671","display_name":"Zhihao Yang","orcid":"https://orcid.org/0000-0001-6186-2024"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihao Yang","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058959286","display_name":"Michael A. Simmons","orcid":"https://orcid.org/0000-0001-7808-2796"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Simmons","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine (NLM), National Institutes of Health, Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine (NLM), National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083081872","display_name":"Zhiyong Lu","orcid":"https://orcid.org/0000-0001-9998-916X"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiyong Lu","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine (NLM), National Institutes of Health, Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine (NLM), National Institutes of Health, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100705977"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09607073,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"527","last_page":"527"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10301","display_name":"Mitochondrial Function and Pathology","score":0.9763000011444092,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13481","display_name":"Neurological diseases and metabolism","score":0.9562000036239624,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/candidate-gene","display_name":"Candidate gene","score":0.6563377976417542},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5660082101821899},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.557488203048706},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5313599109649658},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5260902643203735},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5079377293586731},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5028309226036072},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4619131088256836},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3355576992034912},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29166367650032043},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11967560648918152}],"concepts":[{"id":"https://openalex.org/C69991583","wikidata":"https://www.wikidata.org/wiki/Q1423575","display_name":"Candidate gene","level":3,"score":0.6563377976417542},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5660082101821899},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.557488203048706},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5313599109649658},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5260902643203735},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5079377293586731},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5028309226036072},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4619131088256836},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3355576992034912},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29166367650032043},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11967560648918152},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2975167.2985669","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2975167.2985669","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4206918580","https://openalex.org/W2062935816","https://openalex.org/W2112289353","https://openalex.org/W2139462925","https://openalex.org/W2517462780","https://openalex.org/W2040179368","https://openalex.org/W1685556138","https://openalex.org/W3170065534","https://openalex.org/W2336829704","https://openalex.org/W2794341036"],"abstract_inverted_index":{"An":[0],"orphan":[1,42,159,272],"disease":[2,5,59,164,273],"is":[3,44],"any":[4],"that":[6,171,187],"affects":[7],"a":[8,17,71,226],"small":[9],"percentage":[10],"of":[11,26,36,153,157,213,228,252,271],"the":[12,37,151,168,196,205,211,238,269],"population.":[13],"Orphan":[14],"diseases":[15,43,160],"are":[16,28,277],"great":[18,265],"burden":[19],"to":[20,52,88,130,148,220,267],"patients":[21],"and":[22,24,61,66,90,108,118,144,249,279],"society,":[23],"most":[25],"them":[27],"genetic":[29],"in":[30,112],"origin.":[31],"Unfortunately,":[32],"our":[33,96,172,214,218],"current":[34],"understanding":[35],"genes":[38,55,101,125,165,224],"responsible":[39],"for":[40,179,225,241],"inherited":[41,230],"still":[45],"quite":[46],"limited.":[47],"Developing":[48],"effective":[49],"computational":[50],"algorithms":[51],"discover":[53,89],"disease-causing":[54,93,182],"would":[56],"help":[57],"unveil":[58],"mechanisms":[60],"may":[62],"enable":[63],"better":[64],"diagnosis":[65],"treatment.":[67],"We":[68,184],"have":[69,135],"developed":[70],"novel":[72,222],"method,":[73],"named":[74],"as":[75],"DIGNiFI":[76],"(Disease":[77],"causIng":[78],"GeNe":[79],"FInder),":[80],"which":[81],"uses":[82],"Protein-Protein":[83],"Interaction":[84],"(PPI)":[85],"network-based":[86],"features":[87],"rank":[91],"candidate":[92,181,223],"genes.":[94,183,261],"Specifically,":[95],"approach":[97,215],"computes":[98],"topologically":[99],"similar":[100,127],"by":[102,216],"taking":[103],"into":[104],"account":[105],"both":[106],"local":[107],"global":[109],"connected":[110],"paths":[111],"PPI":[113,137,198],"networks":[114],"via":[115],"Direct":[116],"Neighbors":[117],"Local":[119],"Random":[120],"Walks,":[121],"respectively.":[122],"Furthermore,":[123],"since":[124],"with":[126,139,161,201,246],"phenotypes":[128],"tend":[129],"be":[131,192],"functionally":[132],"related,":[133],"we":[134,209,236],"integrated":[136],"data":[138,147,200],"gene":[140],"ontology":[141],"(GO)":[142],"annotations":[143],"protein":[145],"complex":[146],"further":[149,188],"improve":[150],"performance":[152,189],"this":[154,234],"approach.":[155],"Results":[156],"128":[158],"1184":[162],"known":[163],"collected":[166],"from":[167,204],"Orphanet":[169],"show":[170,186],"proposed":[173],"methods":[174,178],"outperform":[175],"existing":[176],"state-of-the-art":[177],"discovering":[180],"also":[185],"improvement":[190],"can":[191],"achieved":[193],"when":[194],"enriching":[195],"human-curated":[197],"network":[199],"text-mined":[202],"interactions":[203],"biomedical":[206],"literature.":[207],"Finally,":[208],"demonstrate":[210],"utility":[212],"applying":[217],"method":[219,257,263],"identifying":[221],"set":[227],"four":[229],"retinal":[231,243,254],"dystrophies.":[232,255],"In":[233],"study,":[235],"found":[237],"top":[239],"predictions":[240],"these":[242],"dystrophies":[244],"consistent":[245],"literature":[247],"reports":[248],"online":[250],"databases":[251],"other":[253],"Our":[256],"successfully":[258],"prioritizes":[259],"orphan-disease-causative":[260],"This":[262],"has":[264],"potential":[266],"benefit":[268],"field":[270],"research,":[274],"where":[275],"resources":[276],"scarce":[278],"greatly":[280],"needed.":[281]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-12-08T00:00:00"}
