{"id":"https://openalex.org/W2559474243","doi":"https://doi.org/10.1145/2975167.2985638","title":"A Machine Learning Model for Discovery of Protein Isoforms as Biomarkers","display_name":"A Machine Learning Model for Discovery of Protein Isoforms as Biomarkers","publication_year":2016,"publication_date":"2016-10-02","ids":{"openalex":"https://openalex.org/W2559474243","doi":"https://doi.org/10.1145/2975167.2985638","mag":"2559474243"},"language":"en","primary_location":{"id":"doi:10.1145/2975167.2985638","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2975167.2985638","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://scholar.uwindsor.ca/etd/5900","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061477992","display_name":"Manal A. Alshehri","orcid":"https://orcid.org/0000-0002-9266-217X"},"institutions":[{"id":"https://openalex.org/I74413500","display_name":"University of Windsor","ror":"https://ror.org/01gw3d370","country_code":"CA","type":"education","lineage":["https://openalex.org/I74413500"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Manal Alshehri","raw_affiliation_strings":["University of Windsor, Windsor, ON, Canada"],"affiliations":[{"raw_affiliation_string":"University of Windsor, Windsor, ON, Canada","institution_ids":["https://openalex.org/I74413500"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032080063","display_name":"Iman Rezaeian","orcid":"https://orcid.org/0000-0002-6882-2911"},"institutions":[{"id":"https://openalex.org/I74413500","display_name":"University of Windsor","ror":"https://ror.org/01gw3d370","country_code":"CA","type":"education","lineage":["https://openalex.org/I74413500"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Iman Rezaeian","raw_affiliation_strings":["University of Windsor, Windsor, ON, Canada"],"affiliations":[{"raw_affiliation_string":"University of Windsor, Windsor, ON, Canada","institution_ids":["https://openalex.org/I74413500"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009739727","display_name":"Abedalrhman Alkhateeb","orcid":"https://orcid.org/0000-0002-1751-7570"},"institutions":[{"id":"https://openalex.org/I74413500","display_name":"University of Windsor","ror":"https://ror.org/01gw3d370","country_code":"CA","type":"education","lineage":["https://openalex.org/I74413500"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Abed Alkhateeb","raw_affiliation_strings":["University of Windsor, Windsor, ON, Canada"],"affiliations":[{"raw_affiliation_string":"University of Windsor, Windsor, ON, Canada","institution_ids":["https://openalex.org/I74413500"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040978295","display_name":"Luis Rueda","orcid":"https://orcid.org/0000-0001-7988-2058"},"institutions":[{"id":"https://openalex.org/I74413500","display_name":"University of Windsor","ror":"https://ror.org/01gw3d370","country_code":"CA","type":"education","lineage":["https://openalex.org/I74413500"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Luis Rueda","raw_affiliation_strings":["University of Windsor, Windsor, ON, Canada"],"affiliations":[{"raw_affiliation_string":"University of Windsor, Windsor, ON, Canada","institution_ids":["https://openalex.org/I74413500"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5061477992"],"corresponding_institution_ids":["https://openalex.org/I74413500"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09588804,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"474","last_page":"475"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/aka","display_name":"AKA","score":0.7946581840515137},{"id":"https://openalex.org/keywords/gene-isoform","display_name":"Gene isoform","score":0.7887575626373291},{"id":"https://openalex.org/keywords/orfs","display_name":"ORFS","score":0.7213107347488403},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5646677613258362},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5327418446540833},{"id":"https://openalex.org/keywords/open-reading-frame","display_name":"Open reading frame","score":0.5110381841659546},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.4352204203605652},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3448598086833954},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34337764978408813},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3331495225429535},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30497804284095764},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2739754319190979},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.12803584337234497}],"concepts":[{"id":"https://openalex.org/C121158502","wikidata":"https://www.wikidata.org/wiki/Q4652161","display_name":"AKA","level":2,"score":0.7946581840515137},{"id":"https://openalex.org/C53345823","wikidata":"https://www.wikidata.org/wiki/Q5531554","display_name":"Gene isoform","level":3,"score":0.7887575626373291},{"id":"https://openalex.org/C2780530800","wikidata":"https://www.wikidata.org/wiki/Q7072921","display_name":"ORFS","level":5,"score":0.7213107347488403},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5646677613258362},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5327418446540833},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.5110381841659546},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4352204203605652},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3448598086833954},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34337764978408813},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3331495225429535},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30497804284095764},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2739754319190979},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.12803584337234497},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/2975167.2985638","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2975167.2985638","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},{"id":"pmh:oai:scholar.uwindsor.ca:etd-6902","is_oa":true,"landing_page_url":"https://scholar.uwindsor.ca/etd/5900","pdf_url":null,"source":{"id":"https://openalex.org/S4306402218","display_name":"Scholarship at UWindsor (University of Windsor)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I74413500","host_organization_name":"University of Windsor","host_organization_lineage":["https://openalex.org/I74413500"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Electronic Theses and Dissertations","raw_type":"info:eu-repo/semantics/masterThesis"}],"best_oa_location":{"id":"pmh:oai:scholar.uwindsor.ca:etd-6902","is_oa":true,"landing_page_url":"https://scholar.uwindsor.ca/etd/5900","pdf_url":null,"source":{"id":"https://openalex.org/S4306402218","display_name":"Scholarship at UWindsor (University of Windsor)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I74413500","host_organization_name":"University of Windsor","host_organization_lineage":["https://openalex.org/I74413500"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Electronic Theses and Dissertations","raw_type":"info:eu-repo/semantics/masterThesis"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.6299999952316284}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W65148958","https://openalex.org/W179179905","https://openalex.org/W1481278428","https://openalex.org/W1791679738","https://openalex.org/W1860523613","https://openalex.org/W1930624869","https://openalex.org/W1937972861","https://openalex.org/W1964586745","https://openalex.org/W1965087944","https://openalex.org/W1981509058","https://openalex.org/W1996423252","https://openalex.org/W2011920499","https://openalex.org/W2025860055","https://openalex.org/W2043292259","https://openalex.org/W2052931181","https://openalex.org/W2054576015","https://openalex.org/W2059338023","https://openalex.org/W2063956958","https://openalex.org/W2086061426","https://openalex.org/W2091689232","https://openalex.org/W2093710402","https://openalex.org/W2100253170","https://openalex.org/W2101480172","https://openalex.org/W2102813686","https://openalex.org/W2109293916","https://openalex.org/W2117688129","https://openalex.org/W2119821739","https://openalex.org/W2125007784","https://openalex.org/W2127471603","https://openalex.org/W2133990480","https://openalex.org/W2140729960","https://openalex.org/W2141458291","https://openalex.org/W2146143166","https://openalex.org/W2149706766","https://openalex.org/W2153635508","https://openalex.org/W2154053567","https://openalex.org/W2155725346","https://openalex.org/W2158003079","https://openalex.org/W2170352988","https://openalex.org/W2171582839","https://openalex.org/W2284689343","https://openalex.org/W2589381951","https://openalex.org/W2911964244","https://openalex.org/W4241673139"],"related_works":["https://openalex.org/W1978801575","https://openalex.org/W2029252138","https://openalex.org/W4306784270","https://openalex.org/W2101899141","https://openalex.org/W3031046715","https://openalex.org/W2017335389","https://openalex.org/W2358544099","https://openalex.org/W2072439611","https://openalex.org/W3148570048","https://openalex.org/W1976390578"],"abstract_inverted_index":{"We":[0],"developed":[1],"a":[2,13,26],"new":[3,73],"tool":[4],"that":[5,84],"can":[6],"identify":[7,80],"open":[8],"reading":[9],"frames":[10],"(ORFs)":[11],"for":[12,110],"given":[14],"transcript":[15,38],"and":[16],"reconstruct":[17],"protein":[18,82,99],"isoforms":[19,83],"using":[20,52],"RNA-Seq":[21],"data.":[22],"Moreover,":[23],"we":[24,76,101],"use":[25],"modified":[27],"version":[28],"of":[29,32,37,57,68,94,117],"the":[30,55,58,63,65,69],"measure":[31],"abundance":[33],"Fragments":[34],"Per":[35],"Kilobase":[36],"per":[39],"Million":[40],"mapped":[41],"reads":[42],"(FPKM),":[43],"aka":[44],"adaptive":[45],"FPKM":[46],"(AFPKM),":[47],"which":[48],"in":[49,88],"addition":[50],"to":[51,79,104],"information":[53],"about":[54],"length":[56,67],"transcript,":[59],"it":[60],"takes":[61],"into":[62],"account":[64],"actual":[66],"ORF.":[70],"Using":[71,97],"this":[72],"expression":[74],"measure,":[75],"were":[77,85,102],"able":[78,103],"10":[81],"differentially":[86],"expressed":[87],"stage":[89,112],"2":[90,113],"versus":[91],"further":[92],"stages":[93,116],"prostate":[95,118],"cancer.":[96,119],"identified":[98],"isoforms,":[100],"obtain":[105],"more":[106],"than":[107],"97%":[108],"accuracy":[109],"discriminating":[111],"from":[114],"subsequent":[115]},"counts_by_year":[],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
