{"id":"https://openalex.org/W2559112470","doi":"https://doi.org/10.1145/2975167.2975205","title":"Library-Based Microbial Source Tracking via Strain Identification","display_name":"Library-Based Microbial Source Tracking via Strain Identification","publication_year":2016,"publication_date":"2016-10-02","ids":{"openalex":"https://openalex.org/W2559112470","doi":"https://doi.org/10.1145/2975167.2975205","mag":"2559112470"},"language":"en","primary_location":{"id":"doi:10.1145/2975167.2975205","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2975167.2975205","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028552320","display_name":"Jeffrey D. McGovern","orcid":"https://orcid.org/0000-0001-6681-163X"},"institutions":[{"id":"https://openalex.org/I149919469","display_name":"California Polytechnic State University","ror":"https://ror.org/001gpfp45","country_code":"US","type":"education","lineage":["https://openalex.org/I149919469"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jeffrey D. McGovern","raw_affiliation_strings":["Computer Science Department, California Polytechnic State University, San Luis Obispo, CA"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, California Polytechnic State University, San Luis Obispo, CA","institution_ids":["https://openalex.org/I149919469"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103218805","display_name":"Eric N. Johnson","orcid":"https://orcid.org/0000-0001-5845-3641"},"institutions":[{"id":"https://openalex.org/I149919469","display_name":"California Polytechnic State University","ror":"https://ror.org/001gpfp45","country_code":"US","type":"education","lineage":["https://openalex.org/I149919469"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Johnson","raw_affiliation_strings":["Computer Science Department, California Polytechnic State University, San Luis Obispo, CA"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, California Polytechnic State University, San Luis Obispo, CA","institution_ids":["https://openalex.org/I149919469"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102951552","display_name":"Alex Dekhtyar","orcid":"https://orcid.org/0000-0001-8340-6396"},"institutions":[{"id":"https://openalex.org/I149919469","display_name":"California Polytechnic State University","ror":"https://ror.org/001gpfp45","country_code":"US","type":"education","lineage":["https://openalex.org/I149919469"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Dekhtyar","raw_affiliation_strings":["Computer Science Department, California Polytechnic State University, San Luis Obispo, CA"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, California Polytechnic State University, San Luis Obispo, CA","institution_ids":["https://openalex.org/I149919469"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048422181","display_name":"Michael W. Black","orcid":"https://orcid.org/0000-0001-7831-5043"},"institutions":[{"id":"https://openalex.org/I149919469","display_name":"California Polytechnic State University","ror":"https://ror.org/001gpfp45","country_code":"US","type":"education","lineage":["https://openalex.org/I149919469"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Black","raw_affiliation_strings":["Biological Sciences Department, California Polytechnic State University, San Luis Obispo, CA"],"affiliations":[{"raw_affiliation_string":"Biological Sciences Department, California Polytechnic State University, San Luis Obispo, CA","institution_ids":["https://openalex.org/I149919469"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056283029","display_name":"Christopher L. Kitts","orcid":"https://orcid.org/0000-0001-9204-0066"},"institutions":[{"id":"https://openalex.org/I149919469","display_name":"California Polytechnic State University","ror":"https://ror.org/001gpfp45","country_code":"US","type":"education","lineage":["https://openalex.org/I149919469"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Kitts","raw_affiliation_strings":["Biological Sciences Department, California Polytechnic State University, San Luis Obispo, CA"],"affiliations":[{"raw_affiliation_string":"Biological Sciences Department, California Polytechnic State University, San Luis Obispo, CA","institution_ids":["https://openalex.org/I149919469"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000982680","display_name":"Jennifer VanderKelen","orcid":null},"institutions":[{"id":"https://openalex.org/I149919469","display_name":"California Polytechnic State University","ror":"https://ror.org/001gpfp45","country_code":"US","type":"education","lineage":["https://openalex.org/I149919469"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer VanderKelen","raw_affiliation_strings":["Biological Sciences Department, California Polytechnic State University, San Luis Obispo, CA"],"affiliations":[{"raw_affiliation_string":"Biological Sciences Department, California Polytechnic State University, San Luis Obispo, CA","institution_ids":["https://openalex.org/I149919469"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5028552320"],"corresponding_institution_ids":["https://openalex.org/I149919469"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09716922,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"364","last_page":"373"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11667","display_name":"Advanced Chemical Sensor Technologies","score":0.9789000153541565,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7724393010139465},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6169637441635132},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.4404970109462738},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4392082095146179},{"id":"https://openalex.org/keywords/strain","display_name":"Strain (injury)","score":0.4355809986591339},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4209184944629669},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.41645243763923645},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34586718678474426},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2993207573890686},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28177428245544434},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10986664891242981},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.0796041488647461},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.06918856501579285},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.06274616718292236}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7724393010139465},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6169637441635132},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.4404970109462738},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4392082095146179},{"id":"https://openalex.org/C2778022156","wikidata":"https://www.wikidata.org/wiki/Q576145","display_name":"Strain (injury)","level":2,"score":0.4355809986591339},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4209184944629669},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.41645243763923645},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34586718678474426},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2993207573890686},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28177428245544434},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10986664891242981},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0796041488647461},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.06918856501579285},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.06274616718292236},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2975167.2975205","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2975167.2975205","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5600000023841858}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W26758694","https://openalex.org/W141201078","https://openalex.org/W634888637","https://openalex.org/W1500796314","https://openalex.org/W1658221551","https://openalex.org/W1673310716","https://openalex.org/W1868309395","https://openalex.org/W1968955176","https://openalex.org/W2000326935","https://openalex.org/W2008196645","https://openalex.org/W2013547178","https://openalex.org/W2014909207","https://openalex.org/W2078153353","https://openalex.org/W2079372441","https://openalex.org/W2099676349","https://openalex.org/W2138095805","https://openalex.org/W2215608084","https://openalex.org/W2258741585","https://openalex.org/W2562836854"],"related_works":["https://openalex.org/W2084086966","https://openalex.org/W4298130764","https://openalex.org/W2804364458","https://openalex.org/W2117112636","https://openalex.org/W2001981265","https://openalex.org/W2132641928","https://openalex.org/W4310225030","https://openalex.org/W2090259340","https://openalex.org/W1926736923","https://openalex.org/W2158836806"],"abstract_inverted_index":{"Microbial":[0],"Source":[1],"Tracking":[2],"(MST)":[3],"aims":[4],"to":[5],"classify":[6],"the":[7,29,63,77,80,100,103,110,121,141,146],"source":[8],"host-species":[9],"of":[10,18,34,37,47,53,55,66,69,79,102,112,140,145],"biological":[11],"matter,":[12,15],"typically":[13],"fecal":[14,19,64],"using":[16,32,130],"strains":[17],"indicator":[20],"bacteria,":[21],"often":[22],"E.":[23,58],"coli.":[24],"This":[25,90],"paper":[26],"continues":[27],"addressing":[28],"MST":[30,81,115,148],"problem":[31],"analysis":[33,139],"a":[35,51,67,113],"library":[36],"bacterial":[38,122],"fingerprints":[39,54],"started":[40],"in":[41,88,126],"[9].":[42],"The":[43],"Cal":[44],"Poly":[45],"Library":[46],"Pyroprints":[48],"(CPLOP)":[49],"is":[50,128],"collection":[52],"over":[56],"6,000":[57],"coli":[59],"isolates":[60],"collected":[61],"from":[62],"matter":[65],"variety":[68],"host-species.":[70],"In":[71,105],"prior":[72],"work":[73],"[9]":[74],"we":[75,108],"studied":[76],"accuracy":[78,111,142],"process":[82],"based":[83],"on":[84],"k-Nearest":[85],"Neighbors":[86],"discovery":[87],"CPLOP.":[89,151],"process,":[91],"while":[92],"sufficiently":[93],"accurate,":[94],"does":[95],"not":[96],"scale":[97],"well":[98],"with":[99],"size":[101],"database.":[104],"this":[106],"paper,":[107],"study":[109],"clustering-based":[114,147],"approach":[116],"which":[117],"scales":[118],"significantly":[119],"better:":[120],"isolate":[123],"information":[124],"stored":[125],"CPLOP":[127],"clustered":[129],"an":[131],"efficient":[132],"density-based":[133],"clustering":[134],"technique.":[135],"We":[136],"present":[137],"our":[138],"and":[143],"efficiency":[144],"methodology":[149],"for":[150]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
