{"id":"https://openalex.org/W2423687995","doi":"https://doi.org/10.1145/2925985","title":"Improved Algorithms for Constructing Consensus Trees","display_name":"Improved Algorithms for Constructing Consensus Trees","publication_year":2016,"publication_date":"2016-06-17","ids":{"openalex":"https://openalex.org/W2423687995","doi":"https://doi.org/10.1145/2925985","mag":"2423687995"},"language":"en","primary_location":{"id":"doi:10.1145/2925985","is_oa":true,"landing_page_url":"https://doi.org/10.1145/2925985","pdf_url":"http://dl.acm.org/ft_gateway.cfm?id=2925985&type=pdf","source":{"id":"https://openalex.org/S118992489","display_name":"Journal of the ACM","issn_l":"0004-5411","issn":["0004-5411","1557-735X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the ACM","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"http://dl.acm.org/ft_gateway.cfm?id=2925985&type=pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060626918","display_name":"Jesper Jansson","orcid":"https://orcid.org/0000-0001-6859-8932"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Jesper Jansson","raw_affiliation_strings":["Kyoto University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069979101","display_name":"Chuanqi Shen","orcid":"https://orcid.org/0009-0008-4402-4887"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chuanqi Shen","raw_affiliation_strings":["Stanford University, Stanford, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012563463","display_name":"Wing\u2010Kin Sung","orcid":"https://orcid.org/0000-0001-7806-7086"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Wing-Kin Sung","raw_affiliation_strings":["National University of Singapore, Genome, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National University of Singapore, Genome, Singapore","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.7412,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.84798928,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"63","issue":"3","first_page":"1","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9470000267028809,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8037093281745911},{"id":"https://openalex.org/keywords/consensus-algorithm","display_name":"Consensus algorithm","score":0.6730649471282959},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6459107398986816},{"id":"https://openalex.org/keywords/tree-rearrangement","display_name":"Tree rearrangement","score":0.594085156917572},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5019478797912598},{"id":"https://openalex.org/keywords/search-tree","display_name":"Search tree","score":0.4645846486091614},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4628315269947052},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.37633344531059265},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.3700057566165924},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23384389281272888},{"id":"https://openalex.org/keywords/search-algorithm","display_name":"Search algorithm","score":0.16256484389305115}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8037093281745911},{"id":"https://openalex.org/C2983222225","wikidata":"https://www.wikidata.org/wiki/Q2994424","display_name":"Consensus algorithm","level":2,"score":0.6730649471282959},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6459107398986816},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.594085156917572},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5019478797912598},{"id":"https://openalex.org/C207024777","wikidata":"https://www.wikidata.org/wiki/Q621673","display_name":"Search tree","level":3,"score":0.4645846486091614},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4628315269947052},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.37633344531059265},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.3700057566165924},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23384389281272888},{"id":"https://openalex.org/C125583679","wikidata":"https://www.wikidata.org/wiki/Q755673","display_name":"Search algorithm","level":2,"score":0.16256484389305115},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2925985","is_oa":true,"landing_page_url":"https://doi.org/10.1145/2925985","pdf_url":"http://dl.acm.org/ft_gateway.cfm?id=2925985&type=pdf","source":{"id":"https://openalex.org/S118992489","display_name":"Journal of the ACM","issn_l":"0004-5411","issn":["0004-5411","1557-735X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the ACM","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1145/2925985","is_oa":true,"landing_page_url":"https://doi.org/10.1145/2925985","pdf_url":"http://dl.acm.org/ft_gateway.cfm?id=2925985&type=pdf","source":{"id":"https://openalex.org/S118992489","display_name":"Journal of the ACM","issn_l":"0004-5411","issn":["0004-5411","1557-735X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the ACM","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2423687995.pdf","grobid_xml":"https://content.openalex.org/works/W2423687995.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W178414959","https://openalex.org/W938539187","https://openalex.org/W1497575587","https://openalex.org/W1589227310","https://openalex.org/W1599490580","https://openalex.org/W1634257591","https://openalex.org/W1780575089","https://openalex.org/W1867732144","https://openalex.org/W1967160842","https://openalex.org/W1971898771","https://openalex.org/W1971935354","https://openalex.org/W1973044036","https://openalex.org/W1983129102","https://openalex.org/W1990061958","https://openalex.org/W1995028654","https://openalex.org/W1996437477","https://openalex.org/W2011999472","https://openalex.org/W2022948797","https://openalex.org/W2060133823","https://openalex.org/W2071412858","https://openalex.org/W2106841921","https://openalex.org/W2113531912","https://openalex.org/W2137120608","https://openalex.org/W2139736670","https://openalex.org/W2144144677","https://openalex.org/W2146058063","https://openalex.org/W2152341912","https://openalex.org/W2160350701","https://openalex.org/W2313699828","https://openalex.org/W2407545686","https://openalex.org/W2577202510","https://openalex.org/W2610179052","https://openalex.org/W2896140155","https://openalex.org/W4233325831","https://openalex.org/W4238288420","https://openalex.org/W4254593935","https://openalex.org/W4254829036","https://openalex.org/W6773252166"],"related_works":["https://openalex.org/W85430217","https://openalex.org/W4205930990","https://openalex.org/W1993799876","https://openalex.org/W3088015816","https://openalex.org/W2362218761","https://openalex.org/W3037246606","https://openalex.org/W2321133989","https://openalex.org/W1997023990","https://openalex.org/W2113708670","https://openalex.org/W2951172905"],"abstract_inverted_index":{"A":[0],"consensus":[1,25,46,51,57,103,111,122,130,134],"tree":[2,7,47,52,58],"is":[3,142],"a":[4,14],"single":[5],"phylogenetic":[6,19,80],"that":[8,69,149],"summarizes":[9],"the":[10,31,35,43,49,55,74,127,132,139,150],"branching":[11],"structure":[12],"in":[13,30,95,154],"given":[15],"set":[16],"of":[17,24,34],"conflicting":[18],"trees.":[20],"Many":[21],"different":[22],"types":[23],"trees":[26,81,135],"have":[27],"been":[28],"proposed":[29],"literature;":[32],"three":[33],"most":[36],"well-known":[37],"and":[38,54,86,113,131],"widely":[39],"used":[40],"ones":[41],"are":[42,70,136,152],"majority":[44,128],"rule":[45,102,129],",":[48,53],"loose":[50,133],"greedy":[56],".":[59],"This":[60],"article":[61],"presents":[62],"new":[63],"deterministic":[64],"algorithms":[65,93,125,151],"for":[66,126],"constructing":[67],"them":[68],"faster":[71],"than":[72],"all":[73],"previously":[75],"known":[76],"ones.":[77],"Given":[78],"k":[79,118],"with":[82,87],"n":[83,116],"leaves":[84],"each":[85],"identical":[88],"leaf":[89],"label":[90],"sets,":[91],"our":[92],"run":[94],"O":[96,105,114],"(":[97,106,115],"nk":[98,107,144],")":[99,108,119],"time":[100,109,120],"(majority":[101],"tree),":[104,112],"(loose":[110],"2":[117],"(greedy":[121],"tree).":[123],"Our":[124],"optimal":[137],"since":[138],"input":[140],"size":[141],"\u03a9(":[143],").":[145],"Experimental":[146],"results":[147],"show":[148],"fast":[153],"practice.":[155]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
