{"id":"https://openalex.org/W2211614050","doi":"https://doi.org/10.1145/2838739.2838829","title":"Visual Analytics for Large-Scale Bioinformatic Data Sets","display_name":"Visual Analytics for Large-Scale Bioinformatic Data Sets","publication_year":2015,"publication_date":"2015-12-07","ids":{"openalex":"https://openalex.org/W2211614050","doi":"https://doi.org/10.1145/2838739.2838829","mag":"2211614050"},"language":"en","primary_location":{"id":"doi:10.1145/2838739.2838829","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2838739.2838829","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Annual Meeting of the Australian Special Interest Group for Computer Human Interaction","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://eprints.qut.edu.au/89300/1/Samuel%20Smith%20-%20OzCHI%202015%20Short%20Paper%20Final.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000732778","display_name":"Samuel Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Samuel Smith","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Queensland University of Technology, 2 George Street, Brisbane, Queensland, Australia"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Queensland University of Technology, 2 George Street, Brisbane, Queensland, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110256734","display_name":"James M. Hogan","orcid":null},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"James Hogan","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Queensland University of Technology, 2 George Street, Brisbane, Queensland, Australia"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Queensland University of Technology, 2 George Street, Brisbane, Queensland, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047754647","display_name":"Markus Rittenbruch","orcid":"https://orcid.org/0000-0001-9279-1599"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Markus Rittenbruch","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Queensland University of Technology, 2 George Street, Brisbane, Queensland, Australia"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Queensland University of Technology, 2 George Street, Brisbane, Queensland, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024222363","display_name":"Daniel Johnson","orcid":"https://orcid.org/0000-0003-1088-3460"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Daniel Johnson","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Queensland University of Technology, 2 George Street, Brisbane, Queensland, Australia"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Queensland University of Technology, 2 George Street, Brisbane, Queensland, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027680609","display_name":"Margot Brereton","orcid":"https://orcid.org/0000-0002-0982-3404"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Margot Brereton","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Queensland University of Technology, 2 George Street, Brisbane, Queensland, Australia"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Queensland University of Technology, 2 George Street, Brisbane, Queensland, Australia","institution_ids":["https://openalex.org/I160993911"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5000732778"],"corresponding_institution_ids":["https://openalex.org/I160993911"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11012608,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"603","last_page":"607"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9545000195503235,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.656809389591217},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6239409446716309},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6228142380714417},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.5868186354637146},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.5782091021537781},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5539488196372986},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.548240602016449},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4773538112640381},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3704017400741577},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3547438979148865},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3430038094520569},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17692989110946655},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08441153168678284}],"concepts":[{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.656809389591217},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6239409446716309},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6228142380714417},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.5868186354637146},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.5782091021537781},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5539488196372986},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.548240602016449},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4773538112640381},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3704017400741577},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3547438979148865},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3430038094520569},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17692989110946655},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08441153168678284},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/2838739.2838829","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2838739.2838829","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Annual Meeting of the Australian Special Interest Group for Computer Human Interaction","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.qut.edu.au:89300","is_oa":true,"landing_page_url":null,"pdf_url":"https://eprints.qut.edu.au/89300/1/Samuel%20Smith%20-%20OzCHI%202015%20Short%20Paper%20Final.pdf","source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the 27th Australian Computer-Human Interaction Conference (OzCHI 2015)","raw_type":"Chapter in Book, Report or Conference volume"},{"id":"mag:2211614050","is_oa":false,"landing_page_url":"https://eprints.qut.edu.au/89300/","pdf_url":null,"source":{"id":"https://openalex.org/S2764552960","display_name":"Science & Engineering Faculty","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Science & Engineering Faculty","raw_type":null}],"best_oa_location":{"id":"pmh:oai:eprints.qut.edu.au:89300","is_oa":true,"landing_page_url":null,"pdf_url":"https://eprints.qut.edu.au/89300/1/Samuel%20Smith%20-%20OzCHI%202015%20Short%20Paper%20Final.pdf","source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the 27th Australian Computer-Human Interaction Conference (OzCHI 2015)","raw_type":"Chapter in Book, Report or Conference volume"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.8100000023841858}],"awards":[{"id":"https://openalex.org/G8117246886","display_name":null,"funder_award_id":"LP140100574","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"}],"funders":[{"id":"https://openalex.org/F4320320983","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2211614050.pdf","grobid_xml":"https://content.openalex.org/works/W2211614050.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W177671575","https://openalex.org/W566654482","https://openalex.org/W1506842418","https://openalex.org/W2028668568","https://openalex.org/W2091030812","https://openalex.org/W2106281550","https://openalex.org/W2121703775","https://openalex.org/W2131605659","https://openalex.org/W2132881639","https://openalex.org/W2137359451","https://openalex.org/W2149386833","https://openalex.org/W2157748357"],"related_works":["https://openalex.org/W2977436119","https://openalex.org/W2775759996","https://openalex.org/W2020604801","https://openalex.org/W2149239278","https://openalex.org/W2922298707","https://openalex.org/W1765881398","https://openalex.org/W2159591337","https://openalex.org/W3116728410","https://openalex.org/W3034691983","https://openalex.org/W1955019837","https://openalex.org/W2084590843","https://openalex.org/W2899023056","https://openalex.org/W3134339829","https://openalex.org/W3136045369","https://openalex.org/W2953328382","https://openalex.org/W2097546690","https://openalex.org/W2011381521","https://openalex.org/W1623698862","https://openalex.org/W2040213320","https://openalex.org/W2566428216"],"abstract_inverted_index":{"Rapid":[0],"advances":[1],"in":[2,16,92,109],"sequencing":[3],"technologies":[4],"(Next":[5],"Generation":[6],"Sequencing":[7],"or":[8,62],"NGS)":[9],"have":[10],"led":[11],"to":[12,30,33,52,80,113,118,156,165],"a":[13],"vast":[14],"increase":[15],"the":[17,42,48,82,110,121],"quantity":[18],"of":[19,44,50,84,99,123,135,152,168],"bioinformatics":[20,111,128],"data":[21,170],"available,":[22],"with":[23,41,142],"this":[24],"increasing":[25],"scale":[26,90,137],"presenting":[27],"enormous":[28],"challenges":[29],"researchers":[31],"seeking":[32],"identify":[34,53],"complex":[35],"interactions.":[36],"This":[37],"paper":[38],"is":[39],"concerned":[40],"domain":[43,112],"transcriptional":[45],"regulation,":[46],"and":[47,64,88,101,117,163],"use":[49],"visualisation":[51],"relationships":[54],"between":[55,160],"specific":[56],"regulatory":[57],"proteins":[58],"(the":[59],"transcription":[60],"factors":[61],"TFs)":[63],"their":[65,115],"associated":[66],"target":[67],"genes":[68],"(TGs).":[69],"We":[70],"present":[71],"preliminary":[72],"work":[73],"from":[74,132],"an":[75,96],"ongoing":[76],"study":[77],"which":[78],"aims":[79],"determine":[81,114],"effectiveness":[83],"different":[85],"visual":[86],"representations":[87,103],"large":[89],"displays":[91],"supporting":[93],"discovery.":[94],"Following":[95],"iterative":[97],"process":[98],"implementation":[100],"evaluation,":[102],"were":[104],"tested":[105],"by":[106],"potential":[107],"users":[108],"efficacy,":[116],"understand":[119],"better":[120],"range":[122],"ad":[124],"hoc":[125],"practices":[126],"among":[127],"literate":[129],"users.":[130],"Results":[131],"two":[133],"rounds":[134],"small":[136],"user":[138],"studies":[139],"are":[140],"considered":[141],"initial":[143],"findings":[144],"suggesting":[145],"that":[146],"bioinformaticians":[147],"require":[148],"richly":[149],"detailed":[150],"views":[151],"TF":[153,158],"data,":[154],"features":[155],"compare":[157],"layouts":[159],"organisms":[161],"quickly,":[162],"ways":[164],"keep":[166],"track":[167],"interesting":[169],"points.":[171]},"counts_by_year":[],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
