{"id":"https://openalex.org/W2015778047","doi":"https://doi.org/10.1145/2814864.2814884","title":"A linked data platform for finite element biosimulations","display_name":"A linked data platform for finite element biosimulations","publication_year":2015,"publication_date":"2015-09-16","ids":{"openalex":"https://openalex.org/W2015778047","doi":"https://doi.org/10.1145/2814864.2814884","mag":"2015778047"},"language":"en","primary_location":{"id":"doi:10.1145/2814864.2814884","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2814864.2814884","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th International Conference on Semantic Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10379/7474","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102991530","display_name":"Muntazir Mehdi","orcid":"https://orcid.org/0009-0005-6622-4714"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Muntazir Mehdi","raw_affiliation_strings":["National University of Ireland, Galway (NUIG), Ireland","National University of Ireland Galway (NUIG), Ireland#TAB#"],"affiliations":[{"raw_affiliation_string":"National University of Ireland, Galway (NUIG), Ireland","institution_ids":["https://openalex.org/I188760350"]},{"raw_affiliation_string":"National University of Ireland Galway (NUIG), Ireland#TAB#","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045342137","display_name":"Yasar Khan","orcid":"https://orcid.org/0000-0003-1049-1977"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Yasar Khan","raw_affiliation_strings":["National University of Ireland, Galway (NUIG), Ireland","National University of Ireland Galway (NUIG), Ireland#TAB#"],"affiliations":[{"raw_affiliation_string":"National University of Ireland, Galway (NUIG), Ireland","institution_ids":["https://openalex.org/I188760350"]},{"raw_affiliation_string":"National University of Ireland Galway (NUIG), Ireland#TAB#","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053978668","display_name":"Andr\u00e9 Freitas","orcid":null},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Andre Freitas","raw_affiliation_strings":["National University of Ireland, Galway (NUIG), Ireland","National University of Ireland Galway (NUIG), Ireland#TAB#"],"affiliations":[{"raw_affiliation_string":"National University of Ireland, Galway (NUIG), Ireland","institution_ids":["https://openalex.org/I188760350"]},{"raw_affiliation_string":"National University of Ireland Galway (NUIG), Ireland#TAB#","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036151707","display_name":"Joao Jares","orcid":null},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Joao Jares","raw_affiliation_strings":["National University of Ireland, Galway (NUIG), Ireland","National University of Ireland Galway (NUIG), Ireland#TAB#"],"affiliations":[{"raw_affiliation_string":"National University of Ireland, Galway (NUIG), Ireland","institution_ids":["https://openalex.org/I188760350"]},{"raw_affiliation_string":"National University of Ireland Galway (NUIG), Ireland#TAB#","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071104283","display_name":"Stefan Decker","orcid":"https://orcid.org/0000-0001-6324-7164"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Stefan Decker","raw_affiliation_strings":["National University of Ireland, Galway (NUIG), Ireland","National University of Ireland Galway (NUIG), Ireland#TAB#"],"affiliations":[{"raw_affiliation_string":"National University of Ireland, Galway (NUIG), Ireland","institution_ids":["https://openalex.org/I188760350"]},{"raw_affiliation_string":"National University of Ireland Galway (NUIG), Ireland#TAB#","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058460371","display_name":"Ratnesh Sahay","orcid":"https://orcid.org/0000-0003-4864-4174"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Ratnesh Sahay","raw_affiliation_strings":["National University of Ireland, Galway (NUIG), Ireland","National University of Ireland Galway (NUIG), Ireland#TAB#"],"affiliations":[{"raw_affiliation_string":"National University of Ireland, Galway (NUIG), Ireland","institution_ids":["https://openalex.org/I188760350"]},{"raw_affiliation_string":"National University of Ireland Galway (NUIG), Ireland#TAB#","institution_ids":["https://openalex.org/I188760350"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5102991530"],"corresponding_institution_ids":["https://openalex.org/I188760350"],"apc_list":null,"apc_paid":null,"fwci":0.3018,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.6176442,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"89","last_page":"96"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/finite-element-method","display_name":"Finite element method","score":0.7123752236366272},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5619072318077087},{"id":"https://openalex.org/keywords/structural-engineering","display_name":"Structural engineering","score":0.20647922158241272},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.17288419604301453}],"concepts":[{"id":"https://openalex.org/C135628077","wikidata":"https://www.wikidata.org/wiki/Q220184","display_name":"Finite element method","level":2,"score":0.7123752236366272},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5619072318077087},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.20647922158241272},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.17288419604301453}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1145/2814864.2814884","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2814864.2814884","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th International Conference on Semantic Systems","raw_type":"proceedings-article"},{"id":"pmh:oai:https://researchrepository.universityofgalway.ie:10379/7474","is_oa":true,"landing_page_url":"http://hdl.handle.net/10379/7474","pdf_url":"http://hdl.handle.net/10379/7474","source":{"id":"https://openalex.org/S4377196322","display_name":"ARAN (University of Galway Research Repository) (Ollscoil na Gaillimhe \u2013 University of Galway)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I188760350","host_organization_name":"Ollscoil na Gaillimhe \u2013 University of Galway","host_organization_lineage":["https://openalex.org/I188760350"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference paper"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.714.1412","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.714.1412","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://www.insight-centre.org/sites/default/files/publications/mehdi.pdf","raw_type":"text"},{"id":"doi:10.13025/21039","is_oa":true,"landing_page_url":"https://doi.org/10.13025/21039","pdf_url":null,"source":{"id":"https://openalex.org/S4306402280","display_name":"Research Repository UCD (University College Dublin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I100930933","host_organization_name":"University College Dublin","host_organization_lineage":["https://openalex.org/I100930933"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:https://researchrepository.universityofgalway.ie:10379/7474","is_oa":true,"landing_page_url":"http://hdl.handle.net/10379/7474","pdf_url":"http://hdl.handle.net/10379/7474","source":{"id":"https://openalex.org/S4377196322","display_name":"ARAN (University of Galway Research Repository) (Ollscoil na Gaillimhe \u2013 University of Galway)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I188760350","host_organization_name":"Ollscoil na Gaillimhe \u2013 University of Galway","host_organization_lineage":["https://openalex.org/I188760350"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference paper"},"sustainable_development_goals":[{"score":0.6399999856948853,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1383882326","display_name":null,"funder_award_id":"SFI/12/RC/","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G2881606312","display_name":null,"funder_award_id":"SFI/12/RC/2289","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G5098725405","display_name":null,"funder_award_id":"12/RC/","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G6712843611","display_name":null,"funder_award_id":"12/RC/228","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G7362007176","display_name":null,"funder_award_id":"12/RC/2289","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"}],"funders":[{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2015778047.pdf","grobid_xml":"https://content.openalex.org/works/W2015778047.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1986454694","https://openalex.org/W2041228025","https://openalex.org/W2042880070","https://openalex.org/W2045808901","https://openalex.org/W2058128985","https://openalex.org/W2061432508","https://openalex.org/W2090469206","https://openalex.org/W2128268694","https://openalex.org/W2136467995","https://openalex.org/W2145435867","https://openalex.org/W2148014577","https://openalex.org/W2150908245","https://openalex.org/W2171919907"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Biosimulation":[0],"models":[1,95],"have":[2],"been":[3],"recently":[4],"introduced":[5],"to":[6,15,28,40,44,84,105,147],"understand":[7],"the":[8,51,55,86,97,136],"exact":[9],"causative":[10],"factors":[11],"that":[12],"give":[13],"rise":[14],"impairment":[16],"in":[17,54,72,88],"human":[18,37],"organs.":[19],"Finite":[20,62,115],"Element":[21,63,116],"Method":[22],"(FEM)":[23],"provides":[24],"a":[25,47,80,140],"mathematical":[26],"framework":[27],"simulate":[29],"dynamic":[30],"biological":[31],"systems,":[32],"with":[33],"applications":[34],"ranging":[35],"from":[36,124],"ear,":[38],"cardiovascular,":[39],"neurovascular":[41],"research.":[42],"Due":[43],"lack":[45],"of":[46,60,93],"well-integrated":[48],"data":[49,119],"infrastructure,":[50],"steps":[52],"involved":[53],"execution":[56],"and":[57,69,91,109,113,120,143],"comparative":[58],"evaluation":[59],"large":[61],"(FE)":[64,117],"simulations":[65],"are":[66,70],"time":[67],"consuming":[68],"performed":[71],"isolated":[73],"environments.":[74],"In":[75],"this":[76],"paper,":[77],"we":[78],"present":[79],"Linked":[81],"Data":[82],"platform":[83,103,137],"improve":[85],"automation":[87],"integration,":[89],"analysis":[90],"visualisation":[92],"biosimulation":[94],"for":[96,111],"inner-ear":[98],"(cochlea)":[99],"mechanics.":[100],"The":[101],"proposed":[102],"aims":[104],"help":[106],"domain":[107],"scientists":[108],"clinicians":[110],"exploring":[112],"analysing":[114],"numerical":[118],"simulation":[121],"results":[122],"obtained":[123],"multiple":[125],"domains":[126],"such":[127],"as":[128],"biological,":[129],"geometrical,":[130],"mathematical,":[131],"physical":[132],"models.":[133],"We":[134],"validate":[135],"by":[138],"conducting":[139],"qualitative":[141],"survey":[142],"perform":[144],"quantitative":[145],"experiments":[146],"record":[148],"overall":[149],"performance.":[150]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
